Locus 6281

Sequence ID 2R_DroMel_CAF1
Location 19,721,726 – 19,721,830
Length 104
Max. P 0.634938
window10043

overview

Window 3

Location 19,721,726 – 19,721,830
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.79
Mean single sequence MFE -19.40
Consensus MFE -12.90
Energy contribution -12.60
Covariance contribution -0.30
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.67
SVM decision value 0.21
SVM RNA-class probability 0.634938
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19721726 104 - 20766785
UUUCUACUACAUACG----------AAUAUGUACUUUAACGGCCAUGUUUGCGAAACCUAUUGCCUUUAAGCUUUAAAAUAUAAGCACAACUCAAC------GCAGGCAAGCAAGUCAAA
.......((((((..----------..)))))).......(((..(((((((..................((((........))))....((....------..))))))))).)))... ( -16.50)
>DroPse_CAF1 36092 110 - 1
CUUCUACGACAUACAUACACACUCUUAUAUGUACUUAAACGGCCAUGUUUGCGCAACUUAUUGCCUUUAAGCUUUAAAAUAUAAGCAAAG----AC------AGGAGCAAAAAAGCCAAC
...........((((((..........)))))).......(((....(((((((((....))))((((..((((........))))))))----..------....)))))...)))... ( -18.50)
>DroEre_CAF1 31725 104 - 1
UUUCUACUACAUACG----------AAUAUGUACUUUAACGGCCAUGUUUGCGAAACCUAUUGCCUUUAAGCUUUAAAAUAUAAGCACAACUCAAC------GCAGGCAAGCAAGUCAAC
.......((((((..----------..)))))).......(((..(((((((..................((((........))))....((....------..))))))))).)))... ( -16.50)
>DroYak_CAF1 31837 110 - 1
UUUCUACUACAUACG----------AAUAUGUACUUUAACGGCCAUGUUUGCGAAACCUAUUGCCUUUAAGCUUUAAAAUAUAAGCACAACUCAACUGUAUUGCAGGCAAGCAAGUCAAC
.......((((((..----------..)))))).......(((..(((((((..................((((........)))).........(((.....)))))))))).)))... ( -20.50)
>DroAna_CAF1 32073 99 - 1
UUUCAACUACA--------------AAUAUGUACUUUAAUGGCCAUGUUUGCGGAACCUAUUGCCUUUAAGCUUUAAAAUAUAAGCGCAACUCGG-------GCAGGCAAACAAGUCAAC
......(..((--------------((((((..(......)..))))))))..)......((((((....((((........))))((.......-------)))))))).......... ( -22.20)
>DroPer_CAF1 32342 110 - 1
CUUCUACGACAUACAUACACACUCUUAUAUGUACUUAAACGGCCAUGUUUGCGCAACUUAUUGCCUUUAAGCUUUAAAAUAUAAGCAAAG----AC------AGGAGCAAACAAGCCAAC
...........((((((..........)))))).......(((..(((((((((((....))))((((..((((........))))))))----..------....))))))).)))... ( -22.20)
>consensus
UUUCUACUACAUACG__________AAUAUGUACUUUAACGGCCAUGUUUGCGAAACCUAUUGCCUUUAAGCUUUAAAAUAUAAGCACAACUCAAC______GCAGGCAAACAAGUCAAC
........................................(((..(((((((........(((....)))((((........))))....................))))))).)))... (-12.90 = -12.60 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:17 2006