Locus 6280

Sequence ID 2R_DroMel_CAF1
Location 19,721,212 – 19,721,313
Length 101
Max. P 0.845940
window10042

overview

Window 2

Location 19,721,212 – 19,721,313
Length 101
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.05
Mean single sequence MFE -26.80
Consensus MFE -17.50
Energy contribution -16.95
Covariance contribution -0.55
Combinations/Pair 1.32
Mean z-score -2.63
Structure conservation index 0.65
SVM decision value 0.77
SVM RNA-class probability 0.845940
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19721212 101 - 20766785
GAUACGCAACGUAUAUCAACAAUUCGUCCAAUGAUUGGAGUCUUUUGGCGCCACAAAUUG-CCAC-GUGUC--AAGUUGGUAAGGCCGGAGCUCCAAUUGCCAAA-
((((..(...)..))))...............(((((((((..((((((((((....(((-.(..-..).)--))..))))...)))))))))))))))......- ( -24.00)
>DroVir_CAF1 37466 97 - 1
AAACCGCAACGUAUAUCAACAAUUCGUCCAAUAAUUGGAGUCUUUCGGCGCAACAAAUGG-CUACCACGCU--AA----ACAAGGCCGAAGCUCCAAUUGCCAA--
...............................((((((((((..((((((.(......(((-(......)))--).----....)))))))))))))))))....-- ( -23.40)
>DroPse_CAF1 35663 101 - 1
AAUACGCAACGUAUAUCAACAAUUCGUCCAAUAAUUGGAGUCUUUUGGCGC-ACAAAUUG-CCAA-GAGAA--CAAUUGGCAAGGCCAAAGCUCCAGUUGCCAAAG
.....(((((((......))...............(((((((((((((((.-......))-))))-)))).--...(((((...)))))..))))))))))..... ( -29.80)
>DroGri_CAF1 38952 97 - 1
AAACCGCAACGUAUAUCAACAAUUCGUCCAAUAAUUGGAGUCUUUCGGCGCAACAAAUGG-UGCCCACGCC--AA----ACAAGGCCGGAGCUCCAAUUGCCAA--
...............................((((((((((..((((((.(......(((-((....))))--).----....)))))))))))))))))....-- ( -25.20)
>DroMoj_CAF1 55790 97 - 1
AAACCGCAACGUAUAUCAACAAUUCGUCCAAUAAUUGGAGUCUUUCGGCGCAACAAAUGG-CGCUCACGCC--AA----UCAAGGCCGAAACUCCAAUUGCCAA--
...............................((((((((((..((((((.(......(((-((....))))--).----....)))))))))))))))))....-- ( -27.30)
>DroAna_CAF1 31659 104 - 1
GAUACGCAACGUAUAUCAACAAUUCGUCCAAUAAUUGGAGACUUUCGGCGCCAAAAAGCGGCCCA-GAGUCGAAAAUUGGCAAGGCCAAAGCUCCAAUUGCCAAA-
((((..(...)..))))..............(((((((((.((((.((((((((....((((...-..))))....)))))...)))))))))))))))).....- ( -31.10)
>consensus
AAAACGCAACGUAUAUCAACAAUUCGUCCAAUAAUUGGAGUCUUUCGGCGCAACAAAUGG_CCAC_ACGCC__AA____GCAAGGCCGAAGCUCCAAUUGCCAA__
.....((...((......))............(((((((((..((((((...................................)))))))))))))))))..... (-17.50 = -16.95 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:16 2006