| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,167,339 – 3,167,457 |
| Length | 118 |
| Max. P | 0.500000 |
| Location | 3,167,339 – 3,167,457 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.13 |
| Mean single sequence MFE | -33.14 |
| Consensus MFE | -22.05 |
| Energy contribution | -22.83 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3167339 118 - 20766785 UGGCACCGGUGACAAUAAACACCUUGCCGGUCUCAUUGGUUUCUUUGGUGAACUGACCGCCUUGCAUAAGAUCCCUGUGAGGCGGUAUAAAAUGUG-UAGUCAAAACAAGGGAAUUCUG (((.(((((..(...........)..))))).)))..((((((((((.(((.((((((((((..((.........))..)))))))..........-))))))...))))))))))... ( -37.30) >DroGri_CAF1 68421 114 - 1 UGGAGCCGGUCACAAUCACAACUUUGCCGGUCUCAUCCGAUUCCUUUGUGAACUUGCAGCCUUGCAUAAGAUCUCUACAAU-CGGUA---AUCAUCA-GUUUGUAAUUAUCAAAUGUUG ..((((((((...............))))).)))....(((....(((..(((((((......)))...(((..((.....-.))..---)))...)-)))..)))..)))........ ( -21.66) >DroSim_CAF1 58231 118 - 1 UGGCACCGGUGACAAUGAACACCUUGCCGGUCUCAUUGGUUUCUUUGGUGAACUGACCGCCUUGCAUAAGAUCCCUGUGAGGCGGUAUGAAAUGUG-UAGUAAAAACAAGGGAAUUCUG (((.(((((..(...........)..))))).)))..((((((((((....(((((((((((..((.........))..)))))))..........-)))).....))))))))))... ( -35.30) >DroEre_CAF1 56199 118 - 1 UGGCACCGGUGACAAUGAACACCUUGCCGGUUUCAUUUGUUUCUUUGGUGAACUGACCGCCUUGCAUAAGGUCCCUGUAAGGCGGUAUAGAAUGUG-UGAUCAAAACUAGGGAAUUCUG (((.(((((..(...........)..))))).))).....(((((((((...((((((((((((((.........))))))))))).)))..((..-....))..)))))))))..... ( -36.80) >DroYak_CAF1 56988 118 - 1 UGGCACCGGUGACAAUAAACACCUUGCCGGUUUCAUUCGUUUCUUUGGUGAACUGGCCGCCUUGCAUAAGGUCCCUGUAAGGCGGUAUAAAUUGUU-UGGUCAAAACUAUGGAAUCCUG .((((..((((........)))).))))((((((((..((((....(.(((((..(((((((((((.........))))))))))).......)))-)).)..)))).))))))))... ( -36.70) >DroAna_CAF1 51126 113 - 1 UGGCACCAGUCACGAUGACUACUUUGCCGGUUUCAUCAGUCUCUUUGGUGAAUCGGCCGCCUUGCAUAAGGUCCCUGCAAC-----ACAAAUCAAG-UGGUUAGAACUAUAGAUUUCUG .(((...((((.....)))).....(((((((.((((((.....))))))))))))).)))(((((.........)))))(-----(.(((((..(-((((....))))).))))).)) ( -31.10) >consensus UGGCACCGGUGACAAUGAACACCUUGCCGGUCUCAUUCGUUUCUUUGGUGAACUGACCGCCUUGCAUAAGAUCCCUGUAAGGCGGUAUAAAAUGUG_UGGUCAAAACUAGGGAAUUCUG .((((..((((........)))).))))(((.((((..(.....)..))))))).(((((((((((.........)))))))))))................................. (-22.05 = -22.83 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:09 2006