Locus 6279

Sequence ID 2R_DroMel_CAF1
Location 19,713,720 – 19,713,822
Length 102
Max. P 0.537331
window10041

overview

Window 1

Location 19,713,720 – 19,713,822
Length 102
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 69.02
Mean single sequence MFE -35.80
Consensus MFE -13.21
Energy contribution -16.77
Covariance contribution 3.56
Combinations/Pair 1.12
Mean z-score -2.36
Structure conservation index 0.37
SVM decision value 0.01
SVM RNA-class probability 0.537331
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19713720 102 - 20766785
UACUUGACGCGUGCUGCGCGCGUGAUAAGCUCUUGUCACUCG-GGAAGUACGCAGUUUGCUAGAGAAGAUUAGCAUU-UGUCUUAGUUCU-------------AAGCUACACUAG-CA
........(((((((.(.((.(((((((....))))))).))-.).)))))))....((((((.(.((.((((.(((-......))).))-------------)).)).).))))-)) ( -35.00)
>DroSec_CAF1 23509 103 - 1
UACUUGAUGCGUGUUGCGCGCGUGAUAAGCUCUUGUCACUCGCGGAAGUACGCAGUUUGCUAGAGAAGAUUAGCAUU-UGUCUUAGUUCU-------------UAGCUACACUAG-GA
..((((.((((((((.((((.(((((((....))))))).)))).)).))))))((..((((((.(((((.......-.)))))...)).-------------)))).))..)))-). ( -34.70)
>DroEre_CAF1 23572 113 - 1
UACUUGAUGCGGGCUGCGCGAGUGAUAAGCU-CUGUCACUCGGCGGAGUACGCAGUGUGUCAGAGAAGAUUAACAUUGUAAC-UUGUUCCACUG---GAGCAGCAAGAGCUCUUGCGA
(((.....(((..((.(((((((((((....-.)))))))).))).))..)))((((((((......)))..))))))))..-.((((((...)---)))))(((((....))))).. ( -41.30)
>DroYak_CAF1 23597 102 - 1
UACUUGAUGCGUGCUGCUC-------------UUGUCACUCGGGCAAGUACGCAGUUGCCUUGAGGAGAUUAGCAUU-UGUC-UAGUUCAGCUCUCAGUGC-UCAAGCACACUUACUU
.(((.((((.((((((.((-------------((.(((...((((((.(....).))))))))).)))).)))))).-))))-.)))..........((((-....))))........ ( -32.20)
>consensus
UACUUGAUGCGUGCUGCGCGCGUGAUAAGCU_UUGUCACUCGGGGAAGUACGCAGUUUGCUAGAGAAGAUUAGCAUU_UGUC_UAGUUCU_____________CAACUACACUAG_GA
........(((((((.((((.(((((((....))))))).))))..)))))))....((((((......))))))........................................... (-13.21 = -16.77 +   3.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:14 2006