Locus 6278

Sequence ID 2R_DroMel_CAF1
Location 19,713,273 – 19,713,365
Length 92
Max. P 0.905831
window10040

overview

Window 0

Location 19,713,273 – 19,713,365
Length 92
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 77.32
Mean single sequence MFE -14.79
Consensus MFE -10.47
Energy contribution -10.30
Covariance contribution -0.17
Combinations/Pair 1.18
Mean z-score -1.60
Structure conservation index 0.71
SVM decision value 1.04
SVM RNA-class probability 0.905831
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19713273 92 - 20766785
CCCGAAACUUUUUUCCUCUUGUAUGCAAAAGUUUUUAUUGCACUCUGGAGUGGGACCACCUCCCGCC----UCUCACCUACCAUCCCCC----CACCCCU
...((........(((....(..(((((.........)))))..).)))((((((.....)))))).----..))..............----....... ( -14.50)
>DroPse_CAF1 27487 90 - 1
CCCAAAACUUUUUUUUUGUUGUAUGCAAAAGUUUUUAUUGCACUCAGGAGUGGGACUGAACCAAAACCCCAUGCUGCCACACAGACACA----C------
..............(((((((..(((((.........)))))..))((.(((((.............)))))....))..)))))....----.------ ( -14.02)
>DroSec_CAF1 23066 87 - 1
CCCGAAACUUUUUUCCUCUCGUAUGCAAAAGUUUUUAUUGCACUCUGGAGUGGGACCACCUCCCAAC----UCCCGCCUCUCA-----C----CGCCCAU
...(((((((((..............)))))))))...........(((((((((.....)))).))----))).........-----.----....... ( -15.94)
>DroSim_CAF1 22860 87 - 1
CCCGAAACUUUUUUCCUCUUGUAUGCAAAAGUUUUUAUUGCACUCUGGAGUGGGACCACCUCCCACC----UCCCGCCGCUCA-----C----CGCCCAU
...(((((((((..............)))))))))....((...(.(((((((((.....))))).)----))).)..))...-----.----....... ( -17.04)
>DroEre_CAF1 23175 86 - 1
CCCCGAACUUUUUUCCUCUUGUAUGCAAAAGUUUUUAUUGCACUCUGGAGUGGGACCAGCUCCCCUC----UCCC-CCUCUCA-----C----UCCCCCU
.......................(((((.........)))))....(((((((((............----....-..)))))-----)----))).... ( -14.67)
>DroYak_CAF1 23189 90 - 1
CCCGAAACUUUUUUCCUCUCGUAUGCAAAAGUUUUUAUUGCACUCUGGAGUGGGACCAGCACACCCA----UCCC-CCUUUCC-----CCCUUUCCCCCU
(((((((....))))((((.(..(((((.........)))))..).)))).))).............----....-.......-----............ ( -12.60)
>consensus
CCCGAAACUUUUUUCCUCUUGUAUGCAAAAGUUUUUAUUGCACUCUGGAGUGGGACCACCUCCCACC____UCCCGCCUCUCA_____C____CCCCCCU
(((((((....))))((((.(..(((((.........)))))..).)))).))).............................................. (-10.47 = -10.30 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:13 2006