| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,710,533 – 19,710,659 |
| Length | 126 |
| Max. P | 0.995903 |
| Location | 19,710,533 – 19,710,625 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 66.00 |
| Mean single sequence MFE | -29.42 |
| Consensus MFE | -11.56 |
| Energy contribution | -12.44 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19710533 92 + 20766785 CUCAUGUG------------------UGU-AUCGGUGUGUGUUCAGGCUGCUAUUUCCGUUUCAUUGCGACACAA-AGCAUAUGCGGAAGUGCACA---CAAGCACA---CUCGCUCA ....((((------------------(((-((((((.((....)).))))....((((((.....(((.......-.)))...)))))))))))))---))(((...---...))).. ( -28.70) >DroGri_CAF1 23750 79 + 1 ---------------------------GU-GUGUGUUUGA---AAAGCUGCUAUUUCCGUUUCAGAAUGACACAA-AGCACA--CGGAAGUGUUUG---CAGGUACAAUACAAA--CA ---------------------------((-.((((((.(.---..(.((((.......((.((.....)).))..-...(((--(....))))..)---))).).))))))).)--). ( -17.00) >DroWil_CAF1 22545 107 + 1 UUCAUCUGU----GUGUGUG--UGGGUGUUGUGUGUAUAUGUUCGGGCUGCUAUUUCCGUUUCAUUGCGACACAAAAGCAGA--CGGAAGUGCACAACACAUACACA---CUGAUACA ...(((.((----(((((((--((.......(((((((...((((..(((((.....(((......))).......))))).--)))).))))))).))))))))))---).)))... ( -38.10) >DroYak_CAF1 20333 92 + 1 CUCAUGUG------------------UGU-AUCGGUGUGUGUUCAGGCUGCUAUUUCCGUUUCAUUGCGACACAA-AGCAUAUGCGGAAGUGCACG---CAAGCACA---CUCGCCCA ........------------------...-...((((.((((.(..(((((.((((((((.....(((.......-.)))...))))))))))).)---)..).)))---).)))).. ( -31.50) >DroAna_CAF1 21185 103 + 1 UUCAUGUGUGAGUGUGUCGGUGUUGGUGU-AUCGGUGUGCGUUCAGGCUGCUAUUUCCGUUUCAUUGCGACACAA-AGCAUAAACGGAAGUGCACA---CAAGCAAA---C------- ....((((((.(((..((((((......)-)))))..)))...........(((((((((((...(((.......-.))).)))))))))))))))---))......---.------- ( -31.80) >consensus CUCAUGUG__________________UGU_AUCGGUGUGUGUUCAGGCUGCUAUUUCCGUUUCAUUGCGACACAA_AGCAUA__CGGAAGUGCACA___CAAGCACA___CUCA__CA ..................................((((........(.(((.((((((((.....(((.........)))...)))))))))))).......))))............ (-11.56 = -12.44 + 0.88)
| Location | 19,710,552 – 19,710,659 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 63.75 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -12.30 |
| Energy contribution | -12.55 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.53 |
| SVM decision value | 2.63 |
| SVM RNA-class probability | 0.995903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19710552 107 + 20766785 GUGUUCAGGCUGCUAUUUCCGUUUCAUUGCGACACAA-AGCAUAUGCGGAAGUGCACA---CAAGCACACUCGCUCACACUCGCACUCACACUCAUACAC--GCCCACUCACA-- (((....((((((.((((((((.....(((.......-.)))...)))))))))))..---..(((......))).........................--)))....))).-- ( -25.70) >DroWil_CAF1 22577 106 + 1 AUGUUCGGGCUGCUAUUUCCGUUUCAUUGCGACACAAAAGCAGA--CGGAAGUGCACAACACAUACACACUGAUACACACACACA---ACAAACACAAAA--CCCCAUCUAAA-- ......(((.(((.(((((((((....(((.........)))))--)))))))))).....((.......)).............---............--.))).......-- ( -17.90) >DroMoj_CAF1 23002 95 + 1 GUGUUCAAGCUGCUAUUUCCGUUCCAUUGUGACACAA-AGCACA--CGGAAGUGCAUG---UAGCGACACACAUGUACA--------CAG------ACAUACAGACGCGUGAAUG ..(((((.((..((..((((((..(.(((.....)))-.)...)--)))))(((((((---(........)))))))).--------...------......))..)).))))). ( -23.70) >DroAna_CAF1 21222 87 + 1 GCGUUCAGGCUGCUAUUUCCGUUUCAUUGCGACACAA-AGCAUAAACGGAAGUGCACA---CAAGCAAAC--------------AUACAC------AUAC--AGCCGCACACA-- (.((...(((((..((((((((((...(((.......-.))).))))))))))((...---...))....--------------......------...)--))))..)).).-- ( -24.90) >consensus GUGUUCAGGCUGCUAUUUCCGUUUCAUUGCGACACAA_AGCAUA__CGGAAGUGCACA___CAAGCACACUCAU_CACA_____A__CAC______ACAC__ACCCACACAAA__ ..........(((.((((((((.....(((.........)))...)))))))))))........................................................... (-12.30 = -12.55 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:12 2006