Locus 6276

Sequence ID 2R_DroMel_CAF1
Location 19,709,170 – 19,709,263
Length 93
Max. P 0.539960
window10037

overview

Window 7

Location 19,709,170 – 19,709,263
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 79.77
Mean single sequence MFE -24.80
Consensus MFE -17.55
Energy contribution -17.08
Covariance contribution -0.47
Combinations/Pair 1.50
Mean z-score -1.12
Structure conservation index 0.71
SVM decision value 0.01
SVM RNA-class probability 0.539960
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19709170 93 - 20766785
AUUAAAUACCCACCUUAAAGCCCAACAACGGUGGCCUCGAGCAGCUGGUGACAAAUUUUAGCAGCUGCCGGCGCUGCAUAUCAUCGAAACCUU
..............................(..((.(((.(((((((.(((......))).)))))))))).))..)................ ( -25.10)
>DroVir_CAF1 21241 92 - 1
-AAAAUAACUUACCUUAAAACCAAGCAACGGUGGCCGCGAACAGCUGGUGACAAACUUAAGCAGCUGCCGCCGUUGCAAAUCAUCGAAGCCCU
-.......................(((((((((((.((.....((((((.....)))..))).)).)))))))))))................ ( -28.70)
>DroSec_CAF1 19019 93 - 1
AUUGAAUACCCACCUUAAAGCCUAACAGCGGUGGCCUCGAGCAGCUGGUGACAAAUUUCAGGAGCUGACGGCGCUGCAGAUCAUCGAAACCUU
.((((....(((((.....((......)))))))......(((((((....))..........((.....)))))))......))))...... ( -21.90)
>DroYak_CAF1 18906 93 - 1
AUGCAAUACCAACCUUAAAGCCCAACAACGGCGGCCUGGAGCAGCUGGUGACAAAUUUAAGCAGCUGCCGGCGCUGCAGAUCAUCAAAACCUU
.((((...((..((.....(((.......))).....)).(((((((.(..........).))))))).))...))))............... ( -24.20)
>DroMoj_CAF1 21000 92 - 1
-UAUAUAGCUCACCUUAAAGCCCAGCAAUGGGGGUCGUGAGCAGCUGGUGACAAAUUUGAGCAGUUGCCGUCGCUGCAAAUCGUCAAAUCCCU
-......(((........)))(((....)))(((...(((((((((((..((...........))..)))..)))))......)))...))). ( -25.00)
>DroAna_CAF1 19586 93 - 1
AGCUAAUCCUUACUUUAAAACCCAGUAGUGGUGGCCUGGAGCAGCUGGUAACAAACUUGAGCAGCUGCCUGCGCUGCAGAUCAUCGAAGCCCU
.(((.....(((((.........)))))(((((..(((.(((.((.((((.(...........).)))).))))).)))..))))).)))... ( -23.90)
>consensus
AUAAAAUACCCACCUUAAAGCCCAACAACGGUGGCCUCGAGCAGCUGGUGACAAAUUUAAGCAGCUGCCGGCGCUGCAGAUCAUCGAAACCCU
..............................(((((.(((.(((((((.(..........).)))))))))).)))))................ (-17.55 = -17.08 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:10 2006