| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,706,054 – 19,706,150 |
| Length | 96 |
| Max. P | 0.753487 |
| Location | 19,706,054 – 19,706,150 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 77.24 |
| Mean single sequence MFE | -18.61 |
| Consensus MFE | -9.15 |
| Energy contribution | -9.02 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.753487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19706054 96 + 20766785 GCCCUUUAUA-----ACUCUCUAAUGCUGUUCUAAAUCCCCCACAGAUCGAAGUUUGUCAGCAGAUCCUUCGCCAGCCCGCUCGUCUGCUUCAGCAUUCCU ..........-----.......(((((((.............((((((....)))))).(((((((.....((......))..))))))).)))))))... ( -17.60) >DroGri_CAF1 18483 90 + 1 GC-AUAUAUA--AAUACUAAUUAAUGUCUU---UUUU-----UUAGAUUGAAAUCUGUCAGCAGAUCCUGCGCAAUCCUGUUCGGCUGCUGCAGCAUUCAG ..-.......--....((((..((......---))..-----))))..((((..(((.((((((...(((.(((....))).))))))))))))..)))). ( -19.40) >DroSec_CAF1 15898 96 + 1 GCCCUUUAUA-----ACUCUCUAAUGCUGUUCCAAAUCCCCCACAGAUCGAAGUUUGUCAACAGAUCCUUCGGCAGCCCUUUCGGCUACUUCAGCAUUACU ..........-----......((((((((................(.((((((((((....))))..)))))))((((.....))))....)))))))).. ( -20.70) >DroSim_CAF1 15650 96 + 1 GCCCUUUAUA-----ACUCUCUAAUGCUGUUCCAAAUCCCCCACAGAUCGAAGUUUGUCAACAAAUCCUUCGCCAGCCCUCUCGGCUACUUCAGCAUUCCU ..........-----.......(((((((...................(((((((((....))))..)))))..((((.....))))....)))))))... ( -17.40) >DroEre_CAF1 15642 100 + 1 UCCCUUUCUAUGUA-CCUCUCUAAUACUGUUCCCAAUCCCCCAUAGAUCGAGGUCUGUCAGCAGAUCCUUCGCCAGCCCGCUCGUCUUCUGCAGCAUUCCU ...(..((((((..-..........................))))))..)(((..(((..(((((......((......))......))))).)))..))) ( -15.19) >DroYak_CAF1 15800 95 + 1 UCCAUUUCCA-----ACUCCCUAAUGCUGCUCCCAAUCC-CCACAGAUUGAGGUCUGUCAACAGAUUCUUCGCCAGCCCGCUCGUCUGCUGCAGCAUUCCU ..........-----.......((((((((.(((((((.-.....))))).))((((....))))..............((......)).))))))))... ( -21.40) >consensus GCCCUUUAUA_____ACUCUCUAAUGCUGUUCCAAAUCCCCCACAGAUCGAAGUCUGUCAACAGAUCCUUCGCCAGCCCGCUCGGCUGCUGCAGCAUUCCU ......................(((((((...................(((((((((....))))..)))))...........(....)..)))))))... ( -9.15 = -9.02 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:09 2006