Locus 6274

Sequence ID 2R_DroMel_CAF1
Location 19,697,223 – 19,697,338
Length 115
Max. P 0.545219
window10035

overview

Window 5

Location 19,697,223 – 19,697,338
Length 115
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 78.70
Mean single sequence MFE -38.82
Consensus MFE -25.36
Energy contribution -25.12
Covariance contribution -0.25
Combinations/Pair 1.21
Mean z-score -1.25
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.545219
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19697223 115 - 20766785
GUCCAACGAAAAGUGUCUU---UCAAAAACCCACCUGAUAGUAGUAUUUGGAGUGCUCGGUGGCCACAUAACUGGCUGCCUGCCAGCCCUGGCGGGUAAAAGGCAUUUGGGAGUCGGA
.(((.((...(((((((((---(.....((((........(.(((((.....))))))((..((((......))))..)).((((....)))))))).))))))))))....)).))) ( -40.00)
>DroPse_CAF1 11309 112 - 1
GGACAGCUGGAA--GGCAU---UCA-AAACUCACCUGAUAAUAAUACUUUGACGUUUCAGUGGCCACAUAGCUGGCCGCCUGCCAGCCCUGGCGGGUGAAAGGCAUCUGAGUGGUGGA
.....(((....--))).(---(((-..(((((..((.........((((.((......(((((((......)))))))((((((....)))))))).)))).))..)))))..)))) ( -37.10)
>DroEre_CAF1 7185 115 - 1
GUCCAAAUAUAAGUGUCCU---UCAAAAACCCACCUGAUAGUAGUAGUUGGAGUGCUCGGUGGCCACAUAACUGGCCGCCUGCCAACCCUGGCGGGUAAACGGCAUUUGGGAGUCGGA
.(((.....((((((((((---((((..((..((......)).))..))))))(((((((((((((......)))))))).((((....)))))))))...))))))))......))) ( -40.00)
>DroYak_CAF1 7222 115 - 1
GUCCAAAUAAAAGUGUCCU---UCAAAAACACACCUGAUAGUAGUAGUUGGAGUGCUCGGUGGCCACAUAACUGGCCGCCUGCCAACCUUGGCGGGUGAAUGGCAUUUGGGAGUCGGA
.(((......(((((((.(---(((......((((..((.......))..).)))(((((((((((......)))))))).((((....))))))))))).))))))).)))...... ( -39.00)
>DroAna_CAF1 7547 118 - 1
UAUCAAGUAAAAGAAACCAGAAGCAAGAACUCACCUGGUAAUAGUACCUGGAAUUCUCCGUGGCCACGUAGCUGGCGGCUUGCCAGCCCUGGCGGGUGAAGGGCAUCUGGGUGGAGGG
................(((((.((.....(((((((((((....)))).(((....)))...((((....((((((.....))))))..))))))))).)).)).)))))........ ( -39.70)
>DroPer_CAF1 7696 112 - 1
GGACAGCUGGAA--GGCAU---UCA-AAACUCACCUGAUAAUAAUACUUUGACGUUUCAGUGGCCACAUAGCUGGCCGCCUGCCAGCCCUGGCGGGUGAAAGGCAUCUGAGUGGUGGA
.....(((....--))).(---(((-..(((((..((.........((((.((......(((((((......)))))))((((((....)))))))).)))).))..)))))..)))) ( -37.10)
>consensus
GUCCAACUAAAAGUGUCCU___UCAAAAACUCACCUGAUAAUAGUACUUGGAGUGCUCGGUGGCCACAUAACUGGCCGCCUGCCAGCCCUGGCGGGUGAAAGGCAUCUGGGAGGCGGA
.............................((((..((........................(((((......)))))((((((((....))))))))......))..))))....... (-25.36 = -25.12 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:08 2006