Locus 6272

Sequence ID 2R_DroMel_CAF1
Location 19,684,090 – 19,684,210
Length 120
Max. P 0.538124
window10033

overview

Window 3

Location 19,684,090 – 19,684,210
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -41.07
Consensus MFE -25.67
Energy contribution -25.48
Covariance contribution -0.19
Combinations/Pair 1.38
Mean z-score -2.22
Structure conservation index 0.63
SVM decision value 0.01
SVM RNA-class probability 0.538124
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19684090 120 + 20766785
UUGAAAUCGAUCAGGAGAUCGUCAUUUGCACCACCAAGGGUGAGGCCAUUUGCCUGGCCAUCGCCCUCAUGACCACAGCCACUAUGGCCUCUUGUGACCAUGGUGUGGUGGCCAAGAUCA
.(((...(((((....))))))))((((..((((((((((((((((((......))))).)))))))((((..(((((((.....)))....))))..))))...)))))).)))).... ( -47.40)
>DroVir_CAF1 1849 120 + 1
UCGAAAUCGAACAGGAGAUUGUCAUAUGCACCACAAAGGGCGAGGCUAUUUGCUUGGCCAUUGCCAUGAUGACCACGGCAACCAUGUCCUCGUGCGAUCAUGGUGUUGUUGCCAAAAUCA
(((....)))....((..(((.((...((((((.....(((.((((.....)))).)))(((((.((((.(((...(....)...))).)))))))))..))))))...)).)))..)). ( -38.10)
>DroPse_CAF1 5304 120 + 1
UUGAGAUAGAUCAGGAGAUUGUCAUAUGCACAACCAAGGGGGAGGCCAUUUGCCUGGCCAUUGCUCUGAUGACCACGGCCACAAUGUCGUCGUGUGAUCAUGGCGUUGUGGCAAAGAUAA
.........(((........(((((..(((...((....))..(((((......)))))..)))....)))))....(((((((((((((.(......))))))))))))))...))).. ( -38.70)
>DroGri_CAF1 1575 120 + 1
UUGAAAUCGAGCAAGAGAUUGUCAUCUGCACCACAAAGGGCGAGGCGAUUUGUUUGGCUAUCGCCUUAAUGACGACGGCGACGAUGUCGUCGUGCGAUCAUGGAGUUGUUGCCAAGAUCA
..........(((.....(((((((..((.((.....))))((((((((..(.....).)))))))).)))))))(((((((...))))))))))((((.(((........))).)))). ( -41.00)
>DroWil_CAF1 1842 120 + 1
UUGAGAUCGAUCAGGAGAUUGUUAUCUGCACAACAAAGGGUGAAGCCAUUUGUUUGGCCAUUGCCCUGAUGACAACAGCCACCAUGUCGUCGUGUGAUCAUGGUGUUGUUGCUAAAAUUA
.(((((((((((....)))))..)))).))...((.((((..(.((((......))))..)..))))..)).(((((((.(((((((((.....))).)))))))))))))......... ( -38.10)
>DroMoj_CAF1 1528 120 + 1
UUGAAAUAGAACAGGAGAUCGUCAUCUGCACCACAAAGGGCGAGGCAAUUUGCCUCGCCAUUGCAAUGAUGACCACAGCAACUAUGUCCUCGUGCGAUCAUGGCGUCGUUGCAAAGAUCA
................((((((((((((((........((((((((.....))))))))..))))..))))))....(((((.(((((.((....))....))))).)))))...)))). ( -43.10)
>consensus
UUGAAAUCGAUCAGGAGAUUGUCAUCUGCACCACAAAGGGCGAGGCCAUUUGCCUGGCCAUUGCCCUGAUGACCACAGCCACCAUGUCCUCGUGCGAUCAUGGUGUUGUUGCCAAGAUCA
................(((((((((...........((((((((((((......))))).))))))).)))))....(((((.(((...(((((....)))))))).)))))...)))). (-25.67 = -25.48 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:06 2006