| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,683,802 – 19,683,909 |
| Length | 107 |
| Max. P | 0.660660 |
| Location | 19,683,802 – 19,683,909 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.20 |
| Mean single sequence MFE | -28.95 |
| Consensus MFE | -22.60 |
| Energy contribution | -22.63 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19683802 107 + 20766785 -AUCCAGUUGCCGUUUGCGAA--GUAGUACCCCAUGAUAUUAAGCCGGCAGGUGCCUGCAAUC--CCCACGGGCACCUGUGACUAUGAUUGGGAACAGCAAAGCUGCUGAUG -.(((((((((((...((...--.(((((........))))).))))))(((((((((.....--....)))))))))........)))))))..(((((....)))))... ( -36.20) >DroVir_CAF1 1552 106 + 1 -AUAC-U-UCAGAUUUUCAAAUCG---UACCCCAUGAUAUUAAGCCGGCAGACGCAUGUAUUUUAACCAGCUGCGUCUGUGACUAUGACUGGGAACAGUAACGCUGCUGAUG -....-.-((((........((((---(.....)))))....(((..(((((((((.((..........))))))))))).......((((....))))...))).)))).. ( -27.50) >DroGri_CAF1 1272 105 + 1 -AGGA-A-CAAGGUGUUCUUA-CU---UACCCCAUGAUAUUAAGCCGGCAGACGCUUGUAAUUUAACCAGCGGCGUCUGUGACUAUGACUGGGAACAGUAAAGCCGCUGAUG -((((-(-(.....)))))).-..---................((.(((....))).))........(((((((..((((..(((....)))..))))....)))))))... ( -29.90) >DroSec_CAF1 1390 104 + 1 -AUCCAGUUGCCGUUUGCGAA--G---UACCCCAUGAUAUUAAGCCGGCAGGUGCUUGCAAUC--CCCACGGGCACCUGUGACUAUGAUUGGGAACAGCAAAGCUGCUGAUG -...((((.((..(((((...--(---(.(((.((.(((........(((((((((((.....--....)))))))))))...))).)).))).)).))))))).))))... ( -33.20) >DroYak_CAF1 1183 101 + 1 AACUGGGUU----UAUACGAA--C---UACCCCAUGAUAUUAAGCCGGCAGGUGCUUGCAAUC--CCCACGGGCACCUGUGACUAUGAUUGGGAACAACAAAGCUGCUGAUG ....((((.----........--.---.))))..........(((.((((((((((((.....--....)))))))))))..((.((.(((....))))).))).))).... ( -26.40) >DroAna_CAF1 1162 97 + 1 -AUU----U----UCAACAAAACU---UACCCCAUGAUAUUAAGCCGGCAGAUGCUCG-AAUC--UCCACGCGCAUUUGUGACUAUGAUUGGGAACAGUAAUGCUCCUGAUG -...----.----...........---....................((((((((.((-....--....)).)))))))).......((..(((.((....)).)))..)). ( -20.50) >consensus _AUCC_G_U___GUUUACGAA__G___UACCCCAUGAUAUUAAGCCGGCAGAUGCUUGCAAUC__CCCACGGGCACCUGUGACUAUGAUUGGGAACAGCAAAGCUGCUGAUG ..............................((((....((((((.((.((((((((((...........)))))))))))).)).))))))))..(((((....)))))... (-22.60 = -22.63 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:05 2006