Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,681,977 – 19,682,079 |
Length | 102 |
Max. P | 0.839316 |
Location | 19,681,977 – 19,682,079 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 80.97 |
Mean single sequence MFE | -24.14 |
Consensus MFE | -18.02 |
Energy contribution | -18.90 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.05 |
Mean z-score | -1.85 |
Structure conservation index | 0.75 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19681977 102 + 20766785 UAAUUUAAGAGUUUAG-AAAAAUAAACAACCGGUUGGGAAACACAGCUGGUAGAUCACUGGCGAUAGUAUCGAUUGGGCCUGGAACUAUCAAUAUUUCGAUAU------------- ........(((((((.-.....))))).(((((((((....).))))))))...))......((((((.(((........))).)))))).............------------- ( -24.40) >DroSec_CAF1 2054 102 + 1 UAAUUUAAGAGUUUAG-AAAAAUAAACAACCGGUUGGAAAACACAGCUGGUAGAUCGCUGGCGAUAGUAUCGAUUGGGCCUGGAGCUAUCAAUAUUUCGAUAU------------- ..........(((((.-.....))))).((((((((.......))))))))..((((....)))).(((((((((((((.....)))..)))....)))))))------------- ( -24.20) >DroSim_CAF1 2672 102 + 1 UAAUUUAAGAGUUUAG-AAAAAUAAACAACCGGUUGGAAAACACAGCUGGUAGAUCGCUGGCGAUAGUAUCGAUUGGGCCUGGAACUAUCGAUAUUUCGAUAU------------- ........(((((((.-.....))))).((((((((.......))))))))...)).....(((.(((((((((.((........))))))))))))))....------------- ( -26.40) >DroEre_CAF1 2075 106 + 1 UAAUUUAAAAGUUUAG-AAAAAUAAACAACCGGUUGGAAAAUACAGCUGGUAGAUUAAUCGCGAUAGUAUCGAUUGCGUUUGGGACUAUCAAUUUUUCGAUAGAAAG--------- ((((((....(((((.-.....))))).((((((((.......)))))))))))))).....((((((..(((......)))..))))))....((((....)))).--------- ( -26.10) >DroYak_CAF1 2722 103 + 1 UGAUUUAAAAGUUUAGCAAAAAUAAACAACCGGUUGAAAGCGACAGCUGGUCGAUCACUCGCGAUAGUAUCGA-------------UAUCAAUAUUUCGAUUGAAACUAUAAGUUC (((((.....(((((.......))))).((((((((.......)))))))).)))))......(((((.((((-------------(............))))).)))))...... ( -19.60) >consensus UAAUUUAAGAGUUUAG_AAAAAUAAACAACCGGUUGGAAAACACAGCUGGUAGAUCACUGGCGAUAGUAUCGAUUGGGCCUGGAACUAUCAAUAUUUCGAUAU_____________ ..........(((((.......))))).((((((((.......))))))))...........((((((.(((........))).)))))).......................... (-18.02 = -18.90 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:04 2006