| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,670,464 – 19,670,556 |
| Length | 92 |
| Max. P | 0.920443 |
| Location | 19,670,464 – 19,670,556 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 69.78 |
| Mean single sequence MFE | -16.27 |
| Consensus MFE | -10.12 |
| Energy contribution | -10.23 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19670464 92 - 20766785 CAGUGGCUGCCCAAGCACUUUUCACGCUAGUGAAAUCGCCACUUCACUCUCAUCUUCACUCGAUCGCACAUGUUUCACUCGCUUUUC-UGCAC .(((((((((....)))..((((((....))))))..)))))).....................................((.....-.)).. ( -18.30) >DroEre_CAF1 3410 93 - 1 CAGUGGCUGCCCCUACACUUGUCACGGCAGAGAAAUCGCCGCUUCACACUUCACUCUUCUGGUUCGCACAUGUUUCACUCGCUUUUCUUGCAC .((((((((((...((....))...))))((....)))))))).....................................((.......)).. ( -17.70) >DroYak_CAF1 3499 69 - 1 CAGUGGCUGCCCAAACACUUGUCACAGCAGUGAAAUCGCCACUUCACUCUACAC-----------ACACAUGUUGCACUC------------- ..(((((((..(((....)))...))))((((((........))))))...)))-----------...............------------- ( -12.80) >consensus CAGUGGCUGCCCAAACACUUGUCACGGCAGUGAAAUCGCCACUUCACUCUACACU___CU_G_UCGCACAUGUUUCACUCGCUUUUC_UGCAC .((((((((......))....((((....))))....)))))).................................................. (-10.12 = -10.23 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:59 2006