Locus 6266

Sequence ID 2R_DroMel_CAF1
Location 19,667,742 – 19,667,836
Length 94
Max. P 0.517142
window10025

overview

Window 5

Location 19,667,742 – 19,667,836
Length 94
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 78.60
Mean single sequence MFE -29.33
Consensus MFE -21.13
Energy contribution -21.38
Covariance contribution 0.25
Combinations/Pair 1.27
Mean z-score -0.98
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.517142
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19667742 94 - 20766785
-------AUUA---UAUUUACCAAUCUUGCGCAGACGGUCGUUGAUUCUGGCCAGGCUCCUCUUGGCCUCGAUGUUCUUCGGCUCGAUGGCCAGCACAGUGGUG
-------....---....(((((....((((....)(((((((((....(((((((.....)))))))((((......)))).))))))))).)))...))))) ( -31.40)
>DroVir_CAF1 703 93 - 1
-----------AGUUAAAUACCAAUUUUGCGCAAACGUUGGUUGAUGCGUUCCAAACUCCGUUUGGCCUCAAGGUUCUUGGGAUCUAUGGCCAGCACGGUGGUG
-----------.......(((((.....((((((((....)))..)))))........((((((((((...(((((.....)))))..)))))).))))))))) ( -28.70)
>DroSec_CAF1 673 94 - 1
-------AUUA---UAUUUACAAAUCUUGCGCAGACGGUCGUUGAUUCUGGCCAGGCUCCUCUUGGCCUCGAUGUUCUUCGGCUCGAUGGCCAGCACUGUGGUG
-------....---...............(((((..(((((((((....(((((((.....)))))))((((......)))).)))))))))....)))))... ( -30.40)
>DroEre_CAF1 675 101 - 1
UUGUUGGUUUG---UAUUUACCAAUCUUGCGCAGACGUUCGUUGAUCCUGGCCAGGCUUUUUUUGGCCUCGAUGUUCUUGGGCUCGAUGGCCAGCACAGUGGUG
..((((((...---.....))))))....(((.(((....)))....(((((((((((......))))((((.(((....))))))))))))))....)))... ( -31.40)
>DroYak_CAF1 673 101 - 1
UUGUUGGAUUA---UAGUUACCAAUCUUGCGCAGACGUUCGUUGAUCCUGGCCAGGCUUUUCUUGGCCUCGAUGUUCUUGGGCUCGAUGGCCAGCACAGUGGUG
...........---....(((((....(((...(((....))).....((((((((((......))))((((.(((....))))))))))))))))...))))) ( -29.50)
>DroAna_CAF1 673 97 - 1
UUG-UGAUUU------AUUACCUAUUUUGCGCAAACGUUCGUUGAUACGGGCUAAGCUCGUUUUGGCCUCAAGGUUUUUGGGCUCAAUGGCCAGUACGGUUGUG
(((-((....------((.....))....)))))..((((((....))))))..(((.(((.((((((....((((....))))....)))))).))))))... ( -24.60)
>consensus
_______AUUA___UAUUUACCAAUCUUGCGCAGACGUUCGUUGAUCCUGGCCAGGCUCCUCUUGGCCUCGAUGUUCUUGGGCUCGAUGGCCAGCACAGUGGUG
..................(((((....(((......(..((((((....(((((((.....)))))))))))))..)...((((....)))).)))...))))) (-21.13 = -21.38 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:58 2006