Locus 6265

Sequence ID 2R_DroMel_CAF1
Location 19,666,146 – 19,666,244
Length 98
Max. P 0.562701
window10024

overview

Window 4

Location 19,666,146 – 19,666,244
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 78.99
Mean single sequence MFE -25.74
Consensus MFE -17.47
Energy contribution -17.95
Covariance contribution 0.48
Combinations/Pair 1.35
Mean z-score -1.19
Structure conservation index 0.68
SVM decision value 0.06
SVM RNA-class probability 0.562701
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19666146 98 - 20766785
GUUCUGAUGGCCCUAGGCUUCGUCGGGGCACUCUUUGGCUUCACCUCCGUCAGGUUAAUGAUUAUGAACCAGAGAAUUUAAGUAGUCACACU---GAACUU
((((((((.(((((.(((...))))))))..(((((((.((((.....((((......))))..))))))))))).........))))....---)))).. ( -26.60)
>DroSec_CAF1 186 98 - 1
GUUCUGAUGGCCCUAGGCUUCGUCGGGGCACUCUUUGGCUUCACCUCCGUCAGGUGAAUGAUUAUGAACCAGAGAAUUUAAGUAGUCACACU---AAACUU
((((((((((((...)))..)))))))))..(((((((.(((((((.....)))))))..........))))))).......(((.....))---)..... ( -26.70)
>DroSim_CAF1 186 98 - 1
GUUCUGAUGGCCCUAGGCUUCGUCGGGGCACUCUUUGGCUUCACCUCCGUCAGGUGAAUGAUUAUGAACCAGAGAAUUUAAGUAGUCACACU---AAACUU
((((((((((((...)))..)))))))))..(((((((.(((((((.....)))))))..........))))))).......(((.....))---)..... ( -26.70)
>DroEre_CAF1 125 98 - 1
GUUCUGAUGGCUCUUGGUGCCCUAGGGGCACUUUUUGGCUUCACCUCCGUCAGGUGAAUGAUUAUGAACCAAGGAACUUAAGUAGUCACACU---GAACAU
((((...(((((((((((((((...))))))(((((((.(((((((.....)))))))..........)))))))...)))).)))))....---)))).. ( -31.30)
>DroYak_CAF1 186 97 - 1
GUUCUAAUGGCCCUUGGCUUCUUUGGGGCACUUUUUGGCUUCACCUCCGUCAGGUGAAUGAUUAUGAACCAAGCCACUCAAGUAUU-UCACU---AAAAAU
(((((((.((((...))))...)))))))((((..(((((((((((.....))))))..............)))))...))))...-.....---...... ( -23.83)
>DroPer_CAF1 543 94 - 1
GUUCUGAUCGCCUUCGGCAUUGUUGGUGCUUUCUUUGGCUUCACUUCCGUGAAGUAAGUUAU-------CCGAGUAUUUCGGUUAAUAUAUUUGUAUAAUU
((.(..((.(((...)))...))..).))........(((((((....)))))))..((((.-------(((((...))))).)))).............. ( -19.30)
>consensus
GUUCUGAUGGCCCUAGGCUUCGUCGGGGCACUCUUUGGCUUCACCUCCGUCAGGUGAAUGAUUAUGAACCAGAGAAUUUAAGUAGUCACACU___AAACUU
((((((((((((...)))..)))))))))..(((((((.(((((((.....)))))))..........))))))).......................... (-17.47 = -17.95 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:57 2006