Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,662,387 – 19,662,507 |
Length | 120 |
Max. P | 0.587743 |
Location | 19,662,387 – 19,662,507 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -23.43 |
Consensus MFE | -19.21 |
Energy contribution | -19.10 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -1.49 |
Structure conservation index | 0.82 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19662387 120 + 20766785 GUCGGCGGCGAAGUAAACAAAAUAUCGCAAAACGUGCGCGCCAACAAAAAAGCGAAAUAAUCGAAAUAAGGGAAAAAUUCGCCAUAAAUUUUCCCGACAUCCCGAUACCCCCUUUCCCCC (((((.((((..(....).......((((.....))))))))..........(((.....)))......(((((((.((......)).)))))))......))))).............. ( -22.70) >DroSim_CAF1 561 120 + 1 GUCGGCGGCGAAGUAAACAAAACAUCGCAAAACGUGCGCGCCAGCAAAAAAGCGAAAUAAUCGAAAUAAGGGAAAAAUUCGCCAUAAAUUUUCCCGACAUCCCCAUAUCCCGAUACCCCC (((((.((.((.((..........((((......(((......))).....))))..............(((((((.((......)).))))))).)).)).)).....)))))...... ( -23.80) >DroYak_CAF1 629 104 + 1 GUUGGCGGCGAAGUAAACAAAACAUCGCAAAACGUGCGCGCCAACAAAAA---------AUUUAAAUAAGGGAAAAAUUCGCCAUAAAUUUUCCCGAGAACCCC-------CGCCCUCCC (((((((((((.((.......)).))))....(....)))))))).....---------..........(((((((.((......)).)))))))(((......-------....))).. ( -23.80) >consensus GUCGGCGGCGAAGUAAACAAAACAUCGCAAAACGUGCGCGCCAACAAAAAAGCGAAAUAAUCGAAAUAAGGGAAAAAUUCGCCAUAAAUUUUCCCGACAUCCCCAUA_CCCCAUACCCCC (((((((((((.((.......)).))))....(....)))))...........................(((((((.((......)).))))))))))...................... (-19.21 = -19.10 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:54 2006