Locus 6262

Sequence ID 2R_DroMel_CAF1
Location 19,650,493 – 19,650,592
Length 99
Max. P 0.971054
window10019

overview

Window 9

Location 19,650,493 – 19,650,592
Length 99
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.09
Mean single sequence MFE -32.80
Consensus MFE -18.54
Energy contribution -19.60
Covariance contribution 1.06
Combinations/Pair 1.14
Mean z-score -2.57
Structure conservation index 0.57
SVM decision value 1.67
SVM RNA-class probability 0.971054
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19650493 99 - 20766785
CUGGUGAAACGGAAACGAUGCAAAUGGACUAUCGGGCAAUUCACACCAGUCAUAUAUGAG-----AGCUU-----GAAUGA-----GUUCACU------UGAAUUCAUUUGAGUUCCACG
((((((...((....)).(((...((......)).))).....)))))).......((.(-----((((.-----.(((((-----((((...------.)))))))))..))))))).. ( -35.70)
>DroSec_CAF1 7232 97 - 1
CUGGUGAAACGGAAACGAUGCAAAUGGAUUAUCGGGCUAUUCACACCAGCCAUA--UGGG-----CGUUC-----AUUUGA-----AUUCACU------UGAAUUCAUUUGAGUUCCACG
((((((...((....)).......(((((.........))))))))))).....--..((-----..(((-----(..(((-----((((...------.)))))))..))))..))... ( -28.70)
>DroEre_CAF1 7340 118 - 1
CUGGUGAAACGGAAACGAUCCAAAUGGAUUAUCGGGCUAUUCACACCAGCCAUA--UGAGCAAUAUGCUCUGACUGUUUGAGCACGACUCAUUUGGAUUUGAAUUCAUUUGAAUUGCGCG
((((((...((....))((((....))))..............))))))(((.(--((((.....(((((.........)))))...))))).))).....(((((....)))))..... ( -32.60)
>DroYak_CAF1 7544 107 - 1
CUGGUGAAACGGAAACGAUCCAAAUGGAUUAUCGGGCUAUUCACACCAGGCAUA--UGGG-----UGCUCUGACUGCUUGAGCACGACUCAUU------UGAAUUCAUUUGAAUUCGAGG
((((((...((....))((((....))))..............)))))).....--...(-----(((((.........))))))......((------(((((((....))))))))). ( -34.20)
>consensus
CUGGUGAAACGGAAACGAUCCAAAUGGAUUAUCGGGCUAUUCACACCAGCCAUA__UGAG_____UGCUC_____GUUUGA_____ACUCACU______UGAAUUCAUUUGAAUUCCACG
((((((...((....)).......(((((.........))))))))))).......((((.....(((((.........)))))...)))).........((((((....)))))).... (-18.54 = -19.60 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:53 2006