Locus 6260

Sequence ID 2R_DroMel_CAF1
Location 19,649,691 – 19,649,787
Length 96
Max. P 0.590045
window10016

overview

Window 6

Location 19,649,691 – 19,649,787
Length 96
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 72.36
Mean single sequence MFE -30.34
Consensus MFE -20.02
Energy contribution -20.42
Covariance contribution 0.40
Combinations/Pair 1.24
Mean z-score -1.27
Structure conservation index 0.66
SVM decision value 0.11
SVM RNA-class probability 0.590045
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19649691 96 + 20766785
CACUGGUGCACGGA--UUUC--GCUUGGCUUCCUGCCAGCAAUUUGCGCUGCCGUGCGUUCUUUGUGCACUGA--GCAAAAGCAGAGAUGUUUAUCUAAACU
....((((((((((--....--(((.(((.....)))))).....((((....))))....))))))))))..--....(((((....)))))......... ( -29.10)
>DroVir_CAF1 6909 84 + 1
-----UUGUGCGCCAGCUGCCUGGCUGGCUUCCUGCCAACAAUUUA-GCUGCUGUCUGUUUGCUUUUCAGCCAGGAGAGAAGCCGAGAGG------------
-----....(((((((....)))))((((.....))))........-))..((.((.((((.((((((.....)))))))))).)).)).------------ ( -26.30)
>DroSec_CAF1 6460 96 + 1
CACUGGUGCACGGA--UUUC--GCUUGGCUUCCUGCCAGCAAUUUGCGCUGCCGUGCGUUCUUCGUGCACUGA--GGAAAAGCAGAUAUGCUUAUCUAAACU
....((((((((((--....--(((.(((.....)))))).....((((....))))....))))))))))..--(((.(((((....))))).)))..... ( -36.30)
>DroEre_CAF1 6540 96 + 1
CACUGGUGCACGGA--UUUC--GCUUGGCUUCCUGCCAGCAAUUUGCGCUGCCGUGCGUUCUUUGUGCACUGG--GAAAAAGAAGAGGUCGUUAGCUAUACU
..(..(((((((((--....--(((.(((.....)))))).....((((....))))....)))))))))..)--........................... ( -30.50)
>DroYak_CAF1 6694 96 + 1
CACUGGUGCACGGA--UUUC--GAUUGGCUUCCUGCCAGCAAUUUGCGCUGCCGUGCGUUUCUUGUGCACUGA--GAGAAAGUACAGGUUGUUAUCUGCACU
..((((((((((((--...(--(.(((((.....)))))).....((((....)))))..)).)))))))).)--)....(((.(((((....))))).))) ( -29.50)
>consensus
CACUGGUGCACGGA__UUUC__GCUUGGCUUCCUGCCAGCAAUUUGCGCUGCCGUGCGUUCUUUGUGCACUGA__GAAAAAGCAGAGAUGGUUAUCUAAACU
....((((((((((........((.((((.....))))))....(((((....)))))...))))))))))............................... (-20.02 = -20.42 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:50 2006