Locus 6258

Sequence ID 2R_DroMel_CAF1
Location 19,648,886 – 19,648,996
Length 110
Max. P 0.588535
window10012

overview

Window 2

Location 19,648,886 – 19,648,996
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 76.36
Mean single sequence MFE -25.10
Consensus MFE -11.32
Energy contribution -11.24
Covariance contribution -0.08
Combinations/Pair 1.19
Mean z-score -1.83
Structure conservation index 0.45
SVM decision value 0.11
SVM RNA-class probability 0.588535
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19648886 110 - 20766785
CAUGGAGUUUCAUUUAUUUAAUUGAAUGAGAAAUGACCCUCCAUAAUUUAGCGGGGCAAAUCGGAAAAUAGGGGAAAAACGGCAAAACUUUUUCACCUCUUGCAUCCAGU
.((((((..((((((.((((......))))))))))..))))))........(((((((..........(((.((((((.(......))))))).))).)))).)))... ( -24.40)
>DroSec_CAF1 5692 91 - 1
CAUGGAGUUUCAUUUAUUUAAUUGAAUGAGAAAUGACCCUCCAUAACUCAGCGGGGGCAAUCGGAA-------------------AACUUUUCCGCCUCCUGCAUCCAGU
.((((((..((((((.((((......))))))))))..))))))......(((((((....(((((-------------------.....))))).)))))))....... ( -29.70)
>DroSim_CAF1 5733 110 - 1
CAUGGAGAUUCAUUUAUUUAAUUGAAUGAGAAAUGACCCUCUAUAACUCAGCGAGGGAAAUCGGAAAAUAGGGGAAAAACGGCAAAACUUUUUCGCCUCCUGCAUCCAGU
..((((((((((((((......))))))))......(((((...........)))))...))(((.....((.((((((.(......))))))).)))))....)))).. ( -26.70)
>DroEre_CAF1 5762 97 - 1
CAUGGAGUUUCAUUUAUUUAAUUGAAUGAGAAAUGGCCGCCCGUAACUCAGCG------------AAAUUAAGGCAAAAUGGUACAACUU-UUCUCCGUUUGCAUCCAGC
..((((..........(((((((...((((..((((....))))..))))...------------.)))))))(((((.(((........-....)))))))).)))).. ( -20.60)
>DroYak_CAF1 5896 110 - 1
CAUGGAGUUUCAUUUAUUUAAUUGAAUGAGAAAUGACCCUCCAUAAAUCUACGCGCAAACAAGGAAAAACUAGGCAAAAUGGUACAACUUUUUCGCCUUUUGCAUCCAGU
.((((((..((((((.((((......))))))))))..))))))..........(((((..((......))((((.(((.((.....)).))).)))))))))....... ( -24.10)
>consensus
CAUGGAGUUUCAUUUAUUUAAUUGAAUGAGAAAUGACCCUCCAUAACUCAGCGGGGGAAAUCGGAAAAUAGAGGAAAAACGGCAAAACUUUUUCGCCUCUUGCAUCCAGU
.((((((..((((((.((((......))))))))))..)))))).................................................................. (-11.32 = -11.24 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:46 2006