Locus 6257

Sequence ID 2R_DroMel_CAF1
Location 19,647,003 – 19,647,119
Length 116
Max. P 0.997840
window10011

overview

Window 1

Location 19,647,003 – 19,647,119
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -31.68
Consensus MFE -28.58
Energy contribution -28.02
Covariance contribution -0.56
Combinations/Pair 1.11
Mean z-score -2.07
Structure conservation index 0.90
SVM decision value 2.94
SVM RNA-class probability 0.997840
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19647003 116 - 20766785
UCCAAUCCCAAUCUCUCUGCCCAUCCGUUCUGCGUUCUGCUCAUUCAUUGAGUGGGUU-UCCUCCUC---GGGCUACCAAGUUCUCUCUGCAGACUACUCAAUGUCAGCGGAGGAAGUAA
..................((((...((.....)).((..((((.....))))..))..-........---)))).....(.(((.((((((.(((........))).))))))))).).. ( -31.80)
>DroSec_CAF1 3887 116 - 1
UCCAAUCCCAAUCUCUCUGCCCAUCCGUUCUGCGUUCUGCUCAUUCAUUGAGUGGGUU-UCCUCCUC---GGGCUCCCAAGUUCUCUCUGCAGACCACUCAAUGCCAGCGGAGGAAUUAA
.........(((..((((((.(((..(((((((.....(((((.....)))))(((..-(((.....---)))..)))...........)))))..))...)))...))))))..))).. ( -31.10)
>DroSim_CAF1 3890 116 - 1
UCCAAUCCCAAUCUCUCUGCCCAUCCGUUCUGCGUUCUGCUCAUUCAUUGAGUGGGUU-UCCUCCUC---GGGCUCCCAAGUUCUCUCUGCAGACCACUCAAUGCCAGCGGAGGAAGUAA
...........((.((((((.(((..(((((((.....(((((.....)))))(((..-(((.....---)))..)))...........)))))..))...)))...))))))))..... ( -30.00)
>DroEre_CAF1 3926 117 - 1
UCCAAUCCCAAUCUCUCUGCCCAUUUGUUCUGCGUUCUGCUCAUUCAUUGAGUGGGUUUUCCUCCUC---GGGCUACCACGUUCUCUCUGCAGACGACUCAGUGCCAGCAGAGGAAGUAA
...........((.((((((.((((.(((((((.....(((((.....))))).(((..(((.....---)))..)))...........)))))..))..))))...))))))))..... ( -30.20)
>DroYak_CAF1 3989 120 - 1
UCCAAUCCCAAUCUCUCUGCCCAUCUGUUCUGCGUUCUACUCAUUCAUUGAGUGGGUUUUCCUCCUCUUUGGGCUCCCAAGUUCUCUCUGCAGACCACUCAAUGCCGGCAGAGGAAGUAA
...........((.((((((((((.((.(((((..((((((((.....))))))))...........(((((....)))))........))))).))....)))..)))))))))..... ( -35.30)
>consensus
UCCAAUCCCAAUCUCUCUGCCCAUCCGUUCUGCGUUCUGCUCAUUCAUUGAGUGGGUU_UCCUCCUC___GGGCUCCCAAGUUCUCUCUGCAGACCACUCAAUGCCAGCGGAGGAAGUAA
...........((.((((((.(((..(((((((..((((((((.....))))))))..............((....))...........)))))..))...)))...))))))))..... (-28.58 = -28.02 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:45 2006