Locus 6256

Sequence ID 2R_DroMel_CAF1
Location 19,641,101 – 19,641,203
Length 102
Max. P 0.878100
window10010

overview

Window 0

Location 19,641,101 – 19,641,203
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.25
Mean single sequence MFE -24.34
Consensus MFE -23.86
Energy contribution -22.90
Covariance contribution -0.96
Combinations/Pair 1.23
Mean z-score -1.24
Structure conservation index 0.98
SVM decision value 0.90
SVM RNA-class probability 0.878100
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19641101 102 + 20766785
UAAUCAACUCGGAGAGCAGAACUUUUAACCGUGAGAAAUAACCGCAUACUGAAGUGGCCAAAAUCUGGGAAAUCGCCAUGGAGGAACUCGCGGAAAAUACCA
..........((((((.....))))...(((((((......((((........))))(((.....((((....).)))))).....)))))))......)). ( -21.60)
>DroSec_CAF1 5684 102 + 1
UAAUCAACUCGGAGAGCAGAACUUUUAACCGUGAGAAAUAACCGCAUACUGAAGUGGGCAAAAUCUGGGAAAUCGCCACGGAGGAACUCGCGGAAAAUACCA
..........((((((.....))))...(((((((......((((........))))......((((((......)).))))....)))))))......)). ( -24.60)
>DroSim_CAF1 5083 102 + 1
UAAUCAACUCGGAGAGCAGAACUUUUAACCGUGAGAAAUAACCGCAUACUGAAGUGGGCAAAAUCUGGGAAAUCGCCACGGAGGAACUCGCGGAAAAUACCA
..........((((((.....))))...(((((((......((((........))))......((((((......)).))))....)))))))......)). ( -24.60)
>DroEre_CAF1 8468 102 + 1
UAAUCAGCACAGAGAGGAGAACUUUUAACCGUGAAAAAUAACCGCAUACUGAAGUGGCGAAAAUCCGGGAGAACGCCACGGAAGAGUUCGCGGAAAAUACCA
...........(((((.....)))))..(((((((.......(((.(((....))))))....((((((......)).))))....)))))))......... ( -25.20)
>DroYak_CAF1 5874 102 + 1
UAAUCAGCUCGGAGAGGAGAACUUUUAACCGUGAGAAAUAACCGCAUACUGAAGUGGCGAAAAUCCGGGAGAUCGCCACGGAAGACUUUGCGGAAAAUACCA
.......(.(((((((.....))))...))).)........(((((..((...(((((((...((...))..)))))))...))....)))))......... ( -25.70)
>consensus
UAAUCAACUCGGAGAGCAGAACUUUUAACCGUGAGAAAUAACCGCAUACUGAAGUGGCCAAAAUCUGGGAAAUCGCCACGGAGGAACUCGCGGAAAAUACCA
...........(((((.....)))))..(((((((......((((........))))......((((((......)).))))....)))))))......... (-23.86 = -22.90 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:44 2006