Locus 6255

Sequence ID 2R_DroMel_CAF1
Location 19,639,638 – 19,639,742
Length 104
Max. P 0.620067
window10009

overview

Window 9

Location 19,639,638 – 19,639,742
Length 104
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 90.05
Mean single sequence MFE -27.45
Consensus MFE -21.52
Energy contribution -21.56
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.52
Structure conservation index 0.78
SVM decision value 0.18
SVM RNA-class probability 0.620067
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19639638 104 - 20766785
C--------------AUUCCCAUUCCCACCAACAAUGUGUGCUGUUUCGGCGCUGGAAAACAUUAAUUAAAAUUCACUGGACUGGGAAAGCUAUCAGUUGCAUGCAUAUUCAAUUGAU
.--------------.((((((.(((............((((((...))))))((.....))................))).))))))....((((((((.((....)).)))))))) ( -23.10)
>DroSec_CAF1 4189 104 - 1
C--------------AUUCCCAUUUCCAGCAACAAUGUGUGCUGUUUCGGCGCUGGGAAACCUUAAUUAAAAUGCAGUGGACUGGGAAAGCUAUCAGUUGCAUGCAUAUUCAAUUGAU
.--------------.((((((..(((((((.......((((((...)))))).((....))..........)))..)))).))))))....((((((((.((....)).)))))))) ( -30.40)
>DroSim_CAF1 3587 104 - 1
C--------------AUUCCCAUUCCCAGCAACAAUGUGUGCUGUUUCGGCGCUGGGAAACAUUAAUUAAAAUGCAGUGGACUGGGAAAGCUAUCAGUUGCAUGCAUAUUCAAUUGAU
.--------------.......((((((((.((.....))((((...))))))))))))..(((((((((.(((((...((((((........))))))...))))).)).))))))) ( -31.00)
>DroEre_CAF1 6934 103 - 1
C--------------CUUCCCAUUCCCAGCAACAAUGUGUGCUGUUUCGGCGCUGGAAAACAUUAAUUA-AACGCAGCGGACUGGGAAAGCUAUCAGUUGCAUGCAUAUUCAAUUGAU
.--------------.((((((.((((((((........))))).......((((..............-....))))))).))))))....((((((((.((....)).)))))))) ( -26.97)
>DroYak_CAF1 4309 118 - 1
CACUCUCAUUUGCCAUUUCCCAUUCCCACCAACAAUGUGUGCUGUUUCGGCGCUGGAAAACAUUAAUUAAAACGCAGUGGACUGGGAAAGCUAUCAGUGGCAUGCAUAUUCAAUUGAU
..........(((((((...(.(((((((((....(((((((((...))))..((.....)).........))))).)))..)))))).).....)))))))................ ( -25.80)
>consensus
C______________AUUCCCAUUCCCAGCAACAAUGUGUGCUGUUUCGGCGCUGGAAAACAUUAAUUAAAAUGCAGUGGACUGGGAAAGCUAUCAGUUGCAUGCAUAUUCAAUUGAU
................((((((.(((............((((((...))))))..(....).................))).))))))....((((((((.((....)).)))))))) (-21.52 = -21.56 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:43 2006