Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,638,201 – 19,638,294 |
Length | 93 |
Max. P | 0.925110 |
Location | 19,638,201 – 19,638,294 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 75.67 |
Mean single sequence MFE | -24.13 |
Consensus MFE | -9.03 |
Energy contribution | -9.17 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.40 |
Mean z-score | -2.58 |
Structure conservation index | 0.37 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19638201 93 + 20766785 UGCAGCAAACAAA---CAAAUAAACAACCAA----CUGGGCUCGAAUGGAGUAACAAUAACUGGACAGAUAAGAGCAAACAAUAG-GCUCCAU-UGGGGCCC .............---...............----..((((((.((((((((.........((..(......)..))........-)))))))-).)))))) ( -22.23) >DroPse_CAF1 3071 99 + 1 CGCACAAAACAUGCACUAACUAAACAAUGCAUGUUUUAGCCUCAAGUGGAGUAACAAUAACUGGCCUGAUAACAGCAAACAAUGG-ACAU-GU-GCGGGCUC (((((((((((((((............)))))))))).(((.....((......))......)))....................-....-))-)))..... ( -22.90) >DroSec_CAF1 2785 94 + 1 UGCAGCAAACAAA---CAAAUAAACAACCAA----CCGGGUUCGAAUGGAGUAACAAUAACUGGCCAGAUAAGAGCAAACAAUGGGGCUCCAU-UGGGGCCC .............---...............----..((((((.((((((((..((.......(((......).))......))..)))))))-).)))))) ( -25.92) >DroEre_CAF1 2771 89 + 1 UGGAGCAAA-------UAAAUAAACAACUAA----CUGGGUUCCAAUGGAGUAACAAUAAGUGGUUAGAUAAGACCAAACAAUGG-GCUCCAU-UGGCGCCC .........-------...............----..((((.((((((((((.........(((((......)))))........-)))))))-))).)))) ( -29.03) >DroYak_CAF1 2809 89 + 1 UGCAGCAAA-------UAAAUAAACAACUAA----CUGGGUUCGAAUGGAGUAACAAUAACUGG-CAGAUAAGACCAAACAAUGG-GCUCCAUUUGGGGCCC .........-------...............----..(((((((((((((((........((..-......)).(((.....)))-))))))))).)))))) ( -21.80) >DroPer_CAF1 3071 99 + 1 CGCACAAAACAUGCACUAACUAAACAAUGCAUGUUUUAGCCUCAAGUGGAGUAACAAUAACUGGCCUGAUAACAGCAAACAAUGG-ACAU-GU-GCGGGCUC (((((((((((((((............)))))))))).(((.....((......))......)))....................-....-))-)))..... ( -22.90) >consensus UGCAGCAAACA_____UAAAUAAACAACCAA____CUGGGCUCGAAUGGAGUAACAAUAACUGGCCAGAUAAGAGCAAACAAUGG_GCUCCAU_UGGGGCCC .....................................((((((..(((((((.........((............)).........)))))))...)))))) ( -9.03 = -9.17 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:42 2006