| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,633,017 – 19,633,116 |
| Length | 99 |
| Max. P | 0.931290 |
| Location | 19,633,017 – 19,633,116 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.70 |
| Mean single sequence MFE | -23.45 |
| Consensus MFE | -18.04 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19633017 99 + 20766785 CAAUUUAAACAGUGUGGGAAACUUGAAACUUGAAUGAGUUGUGAUGUAAAGGGAAAAGGACCUUUGAUCGAUUAAGGGUCCUUCAAU--GAUUUAAGAAUU------------------- ...((((((((.((.((((..((((((((((....))))).((((.((((((........)))))))))).)))))..)))).)).)--).))))))....------------------- ( -25.20) >DroSim_CAF1 7190 98 + 1 CAAUUUAAACAGUGUGGGAAACUUGAAACUUUAAUGAGUUGUGAUGUAAAGCGAAAAGGACCUUUGAUCGAAGAAGGGUCCUUGAAU--GAU-UAAGAAUG------------------- (((((((...(((..((....))....)))....)))))))..............((((((((((........))))))))))....--...-........------------------- ( -20.80) >DroEre_CAF1 6570 108 + 1 GAAUUUACACAGUG-UGGAAACUUGUAACUUGAAUGAGUUCUGAUGUAAAAGAAAAAUGACCUUUGUUUGCAUGAGGGUCCUUGAAUAUGAU-UAAGAACG----------ACGAAUAUG ...(((((((((..-.(....)....(((((....)))))))).))))))........((((((..(....)..))))))(((((......)-))))....----------......... ( -19.10) >DroYak_CAF1 8008 118 + 1 GAAUUUAAACAGUUAGGGAAACUUCUAACUUGAAUGAGUUGUGAUGUAAAGGGAAAAGGACCUUCGAUUGCUGGAGGGUCCUUGAAUAUC-U-AAAGAUCGUUUUAUGAUUAAGAACGUG ..(((((...(((((((....)..)))))))))))..(((.((((((((((.((.((((((((((........)))))))))).....((-.-...)))).)))))).))))..)))... ( -28.70) >consensus CAAUUUAAACAGUGUGGGAAACUUGAAACUUGAAUGAGUUGUGAUGUAAAGGGAAAAGGACCUUUGAUCGAAGAAGGGUCCUUGAAU__GAU_UAAGAACG___________________ (((((((...(((..((....))....)))....)))))))..............((((((((((........))))))))))..................................... (-18.04 = -18.10 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:41 2006