Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,627,744 – 19,627,839 |
Length | 95 |
Max. P | 0.730498 |
Location | 19,627,744 – 19,627,839 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 92.04 |
Mean single sequence MFE | -43.75 |
Consensus MFE | -42.25 |
Energy contribution | -41.92 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.13 |
Mean z-score | -0.96 |
Structure conservation index | 0.97 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19627744 95 - 20766785 UGCUACUGGUGGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG .((((....)))).(((((((((((((((........)))))))..(..(((..((((..(((...)))...))))..)))..)..)))))))). ( -45.00) >DroSec_CAF1 2181 95 - 1 UGCUGCUGGUGGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG ..(..(.....)..)((((((((((((((........)))))))..(..(((..((((..(((...)))...))))..)))..)..))))))).. ( -43.70) >DroSim_CAF1 2280 95 - 1 UGCUGCUGGUGGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG ..(..(.....)..)((((((((((((((........)))))))..(..(((..((((..(((...)))...))))..)))..)..))))))).. ( -43.70) >DroEre_CAF1 1213 89 - 1 UGCU------GGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUAGAGCUGCUGCUG ....------....(((((((((((((((........)))))))..((((((..((((..(((...)))...))))..))))))..)))))))). ( -44.10) >DroYak_CAF1 2708 89 - 1 UGCU------GGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGGCUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG ....------....(((((((((((((((........)))))))..(..(((..((((..(((...)))...))))..)))..)..)))))))). ( -42.50) >DroAna_CAF1 168 95 - 1 UGCUGCCACUAGUGGGGGGCAGGAGCAGCUUCCGCUCGCUGCUCAUCUGGCCGAGGCUGCUGCAAUCCGCCAGGUCGAGGCUGGAGCUGCUGCUA .(((.((.(....))).)))((.(((((((((.((......((((((((((.((.((....))..)).))))))).))))).))))))))).)). ( -43.50) >consensus UGCUGCUGGUGGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG .((((....)))).(((((((((((((((........)))))))..((((((..((((((........))..))))..))))))..)))))))). (-42.25 = -41.92 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:39 2006