Locus 6250

Sequence ID 2R_DroMel_CAF1
Location 19,620,341 – 19,620,435
Length 94
Max. P 0.616870
window10004

overview

Window 4

Location 19,620,341 – 19,620,435
Length 94
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 92.02
Mean single sequence MFE -32.19
Consensus MFE -26.09
Energy contribution -27.47
Covariance contribution 1.38
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.81
SVM decision value 0.17
SVM RNA-class probability 0.616870
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19620341 94 - 20766785
CAGCCCGUCGAGCCUGACCGGGUCAUUAAUCCCUUGGCCGAGGUAGCCAAAAACACAGUACCUUAUGGCCACAAGCGCAAGAACUCGGCGGGAG
...(((((((((.......(((........))).(((((((((((.............))))))..)))))....(....)..))))))))).. ( -34.62)
>DroSec_CAF1 3660 94 - 1
CAGCCCGUCGAGCCUGACCGGGUCAUCAAUCCCCUGGCCGAGGUAGCCAAAAACACAGUACCUUACGGCCACAAGCGCAAGAACUCGGGGGGAG
..((((((((....))).)))))......((((((((((((((((.............)))))..))))).....(....)......)))))). ( -33.52)
>DroEre_CAF1 3809 94 - 1
CAGCCCGUCGAUCCUGACCGGGUCAUAAAUCCCCUGGCCGAGGCUGCCAAGAACACAGUACCUUACGGCCACAAGCGCAAAAACUCGGCGGCAG
..(((.(((((........(((........))).(((((((((.(((..........))))))..)))))).............)))))))).. ( -28.30)
>DroYak_CAF1 3644 94 - 1
CAGCCUGUCGACCCCGACCGGGUCAUAAAUCCCCUGGCCGAGGUAGCCAAGAACACAGUACCUUACGGCCACAAACGCAAGAACUCGGCGGCAG
....((((((((((.....)))))............((((((((.((((((..........)))..))).))...(....)..))))))))))) ( -32.30)
>consensus
CAGCCCGUCGAGCCUGACCGGGUCAUAAAUCCCCUGGCCGAGGUAGCCAAAAACACAGUACCUUACGGCCACAAGCGCAAGAACUCGGCGGCAG
...(((((((((.......(((........))).(((((((((((.............)))))..))))))............))))))))).. (-26.09 = -27.47 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:37 2006