| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,150,632 – 3,150,732 |
| Length | 100 |
| Max. P | 0.659470 |
| Location | 3,150,632 – 3,150,732 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.24 |
| Mean single sequence MFE | -31.62 |
| Consensus MFE | -20.30 |
| Energy contribution | -22.05 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3150632 100 + 20766785 ACGGGCUGAAGCGGCGCCAUCGCACCGAGCACUACUUCGAGCCGAAGAUCUACCAGGAUCUGUUGGCCACAGCGGUGCUAAAUAAGGUAAGCUAUCUAU-------C-- ...((((....(((.((....)).)))(((((..((..(.(((((((((((....)))))).))))))..))..)))))..........))))......-------.-- ( -32.90) >DroVir_CAF1 49605 96 + 1 AC---AGCAAGCGACGCCAUCGCACCGAGCACUAUUUUGAGCCCAAAAUCUAUCAGGAUCUGUUGGCCACAGCGGUGCUCAAUAAGGUAAGAACAAGU----------G ..---.((..((((.....))))...((((((..((.((.(((..(.((((....)))).)...))))).))..))))))................))----------. ( -24.10) >DroPse_CAF1 36592 109 + 1 AUGGGCUGAAGCGCCGACAUCGCACGGAGCACUACUUCGAGCCGAAGAUCUAUCAGGAUCUGCUGGCCACAGCGGUGCUCAAUAAGGUGAGCCUUGAGCCUUACACUGA ..(((((.(((.((...((((.....((((((..((..(.((((.((((((....))))))..)))))..))..)))))).....)))).))))).)))))........ ( -43.00) >DroWil_CAF1 43209 101 + 1 AUGCCCUCAAGCAACGUCAUCGGACCGAGCAUUAUUUUGAGCCAAAAAUCUAUCAGGAUCUAUUGGCCACAGCGGUGCUAAAUAAGGUAAGUUCCACCACC-------- .((((..........(((....)))..(((((..((.((.(((((..((((....))))...))))))).))..)))))......))))............-------- ( -22.20) >DroYak_CAF1 40385 107 + 1 ACGGGCUGAAGCGGCGCCAUCGCACCGAGCACUACUUCGAGCCGAAGAUCUAUCAGGAUCUGCUGGCCACAGCGGUGCUAAAUAAGGUAAGCUUUCUGAAACCCCAC-- ..(((..(((((.(((....)))(((.(((((..((..(.((((.((((((....))))))..)))))..))..)))))......)))..))))).......)))..-- ( -34.80) >DroPer_CAF1 36759 109 + 1 AUGGGCUGAAGCGCCGACAUCGCACGGAGCACUACUUCGAGCCGAAGAUCUAUCAGGAUCUGCUGGCCACAGCGGUGCUCAAUAAGGUAAGCCNNNNNNNNNNNNNNNN ...((((...(((.......)))...((((((..((..(.((((.((((((....))))))..)))))..))..)))))).........))))................ ( -32.70) >consensus ACGGGCUGAAGCGACGCCAUCGCACCGAGCACUACUUCGAGCCGAAGAUCUAUCAGGAUCUGCUGGCCACAGCGGUGCUAAAUAAGGUAAGCUCUAUG___________ ...((((...((((.....))))(((.(((((..((..(.(((..((((((....))))))...))))..))..)))))......))).))))................ (-20.30 = -22.05 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:05 2006