Locus 6249

Sequence ID 2R_DroMel_CAF1
Location 19,620,080 – 19,620,192
Length 112
Max. P 0.902377
window10003

overview

Window 3

Location 19,620,080 – 19,620,192
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 93.04
Mean single sequence MFE -35.92
Consensus MFE -32.80
Energy contribution -33.32
Covariance contribution 0.52
Combinations/Pair 1.09
Mean z-score -1.39
Structure conservation index 0.91
SVM decision value 1.02
SVM RNA-class probability 0.902377
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19620080 112 + 20766785
CACAGCUCUCGAUGCCUUCGCUUUCGUCCAGCUGCAGGAUGCGGAAGAUCUGCUUGUGCACCACCUGCUUCUGGAUCUCGCGCAUUGACUUCUGUUGACCAGCAACGCGAGC
....((((.((.(((...(((....((((((..(((((.((((.(((.....))).))))...)))))..))))))...)))..(..((....))..)...))).)).)))) ( -40.50)
>DroSec_CAF1 3399 112 + 1
CACAGCUCUCGAUGCCUUCGCUUUCGUCCAGCUGCAGGAUGCGGAAGAUCUGCUUGUGCACCACCUGCUUCUGGAUCUCGCGCAUUGACUUCUGUUGACCAGCAACGCGAGC
....((((.((.(((...(((....((((((..(((((.((((.(((.....))).))))...)))))..))))))...)))..(..((....))..)...))).)).)))) ( -40.50)
>DroEre_CAF1 3548 112 + 1
CACAGCUCUCAAUGCCCUCGCUUUCGUCCAGCUGCAGAAUGCGAAAUAUCUGCUUGUGCACCACCUGCUUCUGGAUCUCGCGCAUUGACUUCUGUUGACCAGCAACGCGAGC
....(((((((((((....((....((((((..((((.....((....))(((....)))....))))..))))))...))))))))).....((((.....))))..)))) ( -32.10)
>DroYak_CAF1 3380 112 + 1
CACAGCUCUCGAUGCCCUCGCUUUCGUCCAGUUGCAGGAUGCGAAAGAUCUGUUUGUGCACCACCUGCUUCUGGAUCUCGCGCAUUGACUUUUGUUGACCAGCAACGCGAGC
....((((.((.(((...(((....((((((..(((((.((((...((.....)).))))...)))))..))))))...)))..(..((....))..)...))).)).)))) ( -36.00)
>DroAna_CAF1 3384 112 + 1
AACAGCUCUCGAUGCCCUCGCUCUCGUCCAGCUGCAGGAUUCGGAAGAACUGUUUGUGCACCACUUGCUUGUGGAUUUCUCGCAUUGACUUCUGUUGGCCAGCAACUCGAGC
....(((((((((((..........(..(((..((((...((....)).)))))))..).((((......)))).......))))))).....((((.....))))..)))) ( -30.50)
>consensus
CACAGCUCUCGAUGCCCUCGCUUUCGUCCAGCUGCAGGAUGCGGAAGAUCUGCUUGUGCACCACCUGCUUCUGGAUCUCGCGCAUUGACUUCUGUUGACCAGCAACGCGAGC
....(((((((((((....((....((((((..(((((.((((.(((.....))).))))...)))))..))))))...))))))))).....((((.....))))..)))) (-32.80 = -33.32 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:36 2006