| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,615,880 – 19,615,988 |
| Length | 108 |
| Max. P | 0.689493 |
| Location | 19,615,880 – 19,615,988 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -45.60 |
| Consensus MFE | -29.69 |
| Energy contribution | -31.15 |
| Covariance contribution | 1.46 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19615880 108 + 20766785 AUGCGGC---GGGAGCGGCACAUUGGGCUGAAUACUAUUAGCGUUGCUGUAACCUUCGCCGGCGGCCGGCAGGUGGUUCUGAUGCUUGUAUGCCGGCGGCGGUGGCUGCUG ..(((((---((..((((((....(.(((((......))))).)))))))..))..(((((.(.(((((((...(((......)))....))))))).))))))))))).. ( -51.50) >DroPse_CAF1 232 95 + 1 AUGCGAAUGCGCUAGUGGCACAUUCGACGGAACAGGAUUGGCACUAUUGUAGCCUUCGCUGCCUGCAGGUAGAUGAUUCUGAUGUUUGUACG------------GCU---- ...((((((.((.....)).))))))(((((.((((((((((((....)).)))....(((((....)))))..)))))))...)))))...------------...---- ( -30.20) >DroSec_CAF1 606 108 + 1 AUGCGGU---GGGAGCGGCGCAUUGGGCUGAAUACUAUUGGCGUUGCUGUAACCUUCGCCGGCGGCCGGCAGGUGGUUCUGAUGCUUGUAUGCCGGCGGUGGUGGCUGCUG ..(((((---.(.((((((((..(((........)))...)))))))).).(((.(((((((((....(((((((.......))))))).))))))))).))).))))).. ( -50.00) >DroSim_CAF1 43 108 + 1 AUGCGGU---GGGAGCGGCGCAUUGGGCUGAAUACUAUUGGCGUUGCUGUAACCCUCGCCGGCGGCCGGCAGGUGGUUCUGAUGCUUGUACGCCGGCGGUGGUGGCUGCUG ..(((((---.(.((((((((..(((........)))...)))))))).).(((.(((((((((....(((((((.......))))))).))))))))).))).))))).. ( -51.70) >DroEre_CAF1 1253 108 + 1 AUGCGGU---GGGAGCGGGGCAUUGGGCUGAAUACUAUUGGCGUUGCUGUAACUUUCGCCGGCACCCGACACGUGGUUCUGAUGCUUGUAUGCCGGCGGAGGUGGCUGCUG ..(((((---.(.(((((.((..(((........)))...)).))))).).(((((((((((((..(((((((......)).)).)))..))))))))))))).))))).. ( -43.90) >DroYak_CAF1 370 108 + 1 AUGCGGU---GGGAGCGCGGCAUUGGGCUGAAUACUAUUGGCGUUGCUGUAACCUUCGCCGGCAGCCGGCACGUGGUUCUGAUGUUUGUAUGCCGGUGGAGGUGGCUGCUG ..(((((---.(.((((((.((.(((........))).)).)).)))).).(((((((((((((..(((.((((.......)))))))..))))))))))))).))))).. ( -46.30) >consensus AUGCGGU___GGGAGCGGCGCAUUGGGCUGAAUACUAUUGGCGUUGCUGUAACCUUCGCCGGCGGCCGGCAGGUGGUUCUGAUGCUUGUAUGCCGGCGGAGGUGGCUGCUG ..(((((......(((((.((..(((........)))...)).)))))...(((.(((((((((....(((((((.......))))))).))))))))).))).))))).. (-29.69 = -31.15 + 1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:33 2006