| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,614,240 – 19,614,351 |
| Length | 111 |
| Max. P | 0.536859 |
| Location | 19,614,240 – 19,614,351 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.66 |
| Mean single sequence MFE | -34.75 |
| Consensus MFE | -14.23 |
| Energy contribution | -15.45 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19614240 111 + 20766785 AGCACACGUCGACGCCGAUGGGCAGCGG---UAACAAUAG------GACCGCCAAUGUCCACAUCAGCCCGAACCUGAUGGCCCCAUACGGAGCGAUCAACAGCUACCGGAUGUCGCCGC .((...(((((....))))).)).((((---..(((...(------(((.......)))).((((((.......))))))........((((((........))).)))..)))..)))) ( -38.30) >DroVir_CAF1 11749 114 + 1 AACACUCUUCAGCGGCAAUUAGCAGCAGUUCAAAUAAUCG------CACAGCCAAUGUGCACAUCAGUCCAAAUCUUAUGUCACAUUAUGGGGCCAUCAACAGCUACAGAAUGUCGCCUC ...........((((((..((((.((.(((.....))).)------)...(((((((((.((((.((.......)).))))))))))....)))........)))).....))))))... ( -24.80) >DroPse_CAF1 7444 111 + 1 AGCAUACCUCGGCGCCAAUAAGUAGCAC---AAACAAUCG------CACCACCAACGUCCACAUCAGUCCCAAUCUGAUGGCCUCCUACGGGGCGAUGAACAGCUAUAGGAUGUCGCCGC .........(((((.((.(..(((((..---.....((((------(..............((((((.......))))))....((....))))))).....)))))..).)).))))). ( -32.20) >DroMoj_CAF1 7496 114 + 1 AGCAUACCUCGGCGGCAAUUAGCGGUAGUUCGAACAACCG------CACGGCGAAUGUCCACAUCAGUCCCAAUCUGAUGUCACACUAUGGCGCCAUCAAUAGCUAUCGAAUGUCGCCGC .........((((((((....(((((.((....)).))))------)..((((...((..(((((((.......)))))))...)).....))))................)))))))). ( -38.80) >DroAna_CAF1 6782 117 + 1 AACACACCUCGGCGCCCAUGGGCGGUAG---CAACAACAAUCGCACUACCGCCAAUGUCCACAUCAGCCCGAACCUGAUGGCUCCCUAUGGGGCCAUCAAUAGCUAUCGGAUGUCGCCGC .........(((((..(((.((((((((---..............)))))))).)))..)(((((..........((((((((((....))))))))))..........))))).)))). ( -44.69) >DroPer_CAF1 7452 111 + 1 AGCAUACCUCGGCACCAAUAAGCAGCAC---AAACAAUCG------CACCACCAACGUCCACAUCAGUCCCAAUCUGAUGGCCUCCUACGGGGCGAUGAACAGCUAUAGGAUGUCGCCGC .........((((...........((..---........)------).......((((((.((((((.......))))))(((((....)))))..............)))))).)))). ( -29.70) >consensus AGCACACCUCGGCGCCAAUAAGCAGCAG___AAACAAUCG______CACCGCCAAUGUCCACAUCAGUCCCAAUCUGAUGGCCCCCUACGGGGCCAUCAACAGCUAUAGGAUGUCGCCGC .........((((((......))...............................((((((.((((((.......))))))...........(((........)))...)))))).)))). (-14.23 = -15.45 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:32 2006