Locus 6244

Sequence ID 2R_DroMel_CAF1
Location 19,611,150 – 19,611,242
Length 92
Max. P 0.620542
window9998

overview

Window 8

Location 19,611,150 – 19,611,242
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 85.94
Mean single sequence MFE -28.74
Consensus MFE -22.69
Energy contribution -24.08
Covariance contribution 1.39
Combinations/Pair 1.19
Mean z-score -2.04
Structure conservation index 0.79
SVM decision value 0.18
SVM RNA-class probability 0.620542
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19611150 92 - 20766785
ACUGAGGCUCCUCGGAACGCUUACCAUUGGACUGCUUACCCCGCAGUUUGGGCAUAAUGUUGACUGGCUUGUCGACAUGCUCCUUUUCCACA
...(((....)))((((...........(((((((.......)))))))(((((...(((((((......))))))))))))...))))... ( -29.10)
>DroSec_CAF1 3668 92 - 1
ACUGAGGCUCCUCGGAGCGCUUCCCAUUGGACUGCUUGCCCCGCAGUUUGGGCAUAAUGUUGACUGGCUUGUCGACAUGCUCCUUUUCCACA
...(((....)))(((((....((((...((((((.......))))))))))....((((((((......)))))))))))))......... ( -34.70)
>DroSim_CAF1 5020 86 - 1
ACUGA-GCUCCUCGGAGCGCUUCC-AAUGGACUGCUUGCC-CGCAGCUUG-GCAUAAUGUUGACUGGCUUGUCGACAUGCUCUUUUCACA--
..(((-((((....))))((..((-(..((.((((.....-.))))))))-)....((((((((......)))))))))).....)))..-- ( -26.30)
>DroEre_CAF1 3664 92 - 1
ACUGGGGCUCCUCGGAGCGCUUACCAUUGGACUGCUUUCCCCGCAGUUUGGGCACAAUGUUGACUGGUUUGUCGACAUGCUCCUUUUCCACA
...(((....)))((((((((((......((((((.......)))))))))))...((((((((......)))))))))))))......... ( -32.40)
>DroYak_CAF1 3667 92 - 1
ACUGAGGCUCCUCGGAGCGUUUACCAUUGGACUGCUUUCCUCGCAGUUUGGGCACAAUGUUGACUGGUUUGUCAACAUGCUCCUUUUCCACA
...(((....)))(((((........(..((((((.......))))))..).....((((((((......)))))))))))))......... ( -33.50)
>DroAna_CAF1 3656 92 - 1
AUUGCAUGUCCUCCGAGCGCUUGCCAUUCGACUGUUUUCCCCUCAAUUUGGGCACAAUGUUAACCGGCUUGUCCACGUGCUCCUUUUCCGCC
..............((((((..(((..(..((.......(((.......)))......))..)..)))..(....))))))).......... ( -16.42)
>consensus
ACUGAGGCUCCUCGGAGCGCUUACCAUUGGACUGCUUUCCCCGCAGUUUGGGCACAAUGUUGACUGGCUUGUCGACAUGCUCCUUUUCCACA
...(((....)))(((((((...(((...((((((.......)))))))))))...((((((((......)))))))))))))......... (-22.69 = -24.08 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:31 2006