Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,606,958 – 19,607,067 |
Length | 109 |
Max. P | 0.648502 |
Location | 19,606,958 – 19,607,067 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 87.69 |
Mean single sequence MFE | -19.55 |
Consensus MFE | -16.26 |
Energy contribution | -16.15 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.28 |
Mean z-score | -1.85 |
Structure conservation index | 0.83 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19606958 109 - 20766785 UCCCAUUUUAUGUACGUAUCCACUUUACAGAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAGCCAGUACGCUCGUAUGUACAUACGUUUAUCAAUUCG ........((((((((((((.......((((.....)))).(------(.(((......))).)))))))..((((((((......))))))))))))))).............. ( -24.40) >DroSec_CAF1 5582 109 - 1 UCCCAUUUUAUGUACGUAUCCACUUUACACAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAACCAGUACGCUCGUAUGUACAUACGUUUAUUAAUUCG ........(((((((((((...............((((((..------...............)))))).....(((........)))..))))))))))).............. ( -16.43) >DroSim_CAF1 5441 109 - 1 UCCCAUUUUAUGUACGUAUCCACUUUACACAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAGCCAGUACGCUCGUAUGUACAUACGUUUAUUAAUUCG ........((((((((((.......)))......((((((..------...............))))))...((((((((......))))))))))))))).............. ( -21.33) >DroEre_CAF1 5704 109 - 1 UCCCAUUUUAUGUACGUAUCCACUUUACAAAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAGUCAGUACGCUCGUAUGUACAUACGUUUAUUAUUUCG ........((((((((((.......)))......((((((..------...............))))))...((((((((......))))))))))))))).............. ( -19.63) >DroYak_CAF1 5604 109 - 1 UCCCAUUUUAUGUACGUAUCCACUUUACAAAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAGCCAGUACGCUCGUGUGUACAUACGUUUAUUAUUUCG ........((((((((((.......)))......((((((..------...............))))))...((((((((......))))))))))))))).............. ( -20.33) >DroAna_CAF1 5355 107 - 1 ----UUUUUAUAUUCGUAUCCGCUUAGCA-AAACUAUUCACUACCACAGCAUACACAU-UAUUUAGAUACAUAUGCAGGCGAGUAUGCUAAUAUGUACAUACAUUUGU--AUUCG ----....(((((((((....(..(((..-...)))..).........(((((...((-(.....)))...)))))..))))))))).......(((((......)))--))... ( -15.20) >consensus UCCCAUUUUAUGUACGUAUCCACUUUACAAAAACUAUCUGCU______GCAUACACACAUAUCCAGAUACAUAUGCGAGCCAGUACGCUCGUAUGUACAUACGUUUAUUAAUUCG .........(((.((((((...............((((((.......................)))))).((((((((((......))))))))))..)))))).)))....... (-16.26 = -16.15 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:30 2006