Locus 6242

Sequence ID 2R_DroMel_CAF1
Location 19,605,438 – 19,605,529
Length 91
Max. P 0.680667
window9996

overview

Window 6

Location 19,605,438 – 19,605,529
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 85.81
Mean single sequence MFE -28.86
Consensus MFE -20.83
Energy contribution -22.04
Covariance contribution 1.21
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.72
SVM decision value 0.31
SVM RNA-class probability 0.680667
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19605438 91 - 20766785
GGCAAAUGUUUGCGAUGCAUGUGUUGGUCGGCUUUUUGGGGUAAUACAACAAUUGCUCGCGCUCUUGGCCAAAGGAGGACAGUCUCCGAGU
(((....(..(((((.(((..(((((....((((....))))....)))))..))))))))..)...)))...(((((....))))).... ( -30.40)
>DroSec_CAF1 4095 91 - 1
GGCAAAUGUUUGCGAUGCAUGUGUUGGUCGGCUUUUUGGGGUAAUACAACAAUUGCUUGCGCUCUUGGCCAAAGGAGGACAGUCUCCGAGU
(((....(..(((((.(((..(((((....((((....))))....)))))..))))))))..)...)))...(((((....))))).... ( -28.30)
>DroSim_CAF1 3963 91 - 1
GGCAAAUGUUUGCGAUGCAUGUGUUGGUCGGCUUUUUGGGGUAAUACAACAAUUGCUCGCGCUCUUGGCCAAAGGAGGACAGUCUCCGAGU
(((....(..(((((.(((..(((((....((((....))))....)))))..))))))))..)...)))...(((((....))))).... ( -30.40)
>DroEre_CAF1 4210 90 - 1
GGCAAAUGUUUGCGCUGCAUGUGUUGGUCGGCUUUUUGGGGUAAUACAACAAUUGCACGCGUUGUUGGCCAAAGA-AAACCGUCUACGAGU
(((.((((..((((.((((..(((((....((((....))))....)))))..)))))))).)))).))).....-..((((....)).)) ( -24.40)
>DroYak_CAF1 4156 74 - 1
GGCUGAUGUUUGCGAUGCAUGUGUUGGUCGGCUUUUUGGGCUAAUACAACAAUUGCACGCAUUCUUAGCC-----------------GAGU
((((((.(..((((.((((..(((((((..(((.....)))..)).)))))..))))))))..)))))))-----------------.... ( -30.80)
>consensus
GGCAAAUGUUUGCGAUGCAUGUGUUGGUCGGCUUUUUGGGGUAAUACAACAAUUGCUCGCGCUCUUGGCCAAAGGAGGACAGUCUCCGAGU
(((....(..(((((.(((..(((((....((((....))))....)))))..))))))))..)...)))...(((((....))))).... (-20.83 = -22.04 +   1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:29 2006