Locus 6241

Sequence ID 2R_DroMel_CAF1
Location 19,605,173 – 19,605,286
Length 113
Max. P 0.979490
window9995

overview

Window 5

Location 19,605,173 – 19,605,286
Length 113
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 90.96
Mean single sequence MFE -29.09
Consensus MFE -24.64
Energy contribution -25.32
Covariance contribution 0.68
Combinations/Pair 1.07
Mean z-score -1.98
Structure conservation index 0.85
SVM decision value 1.84
SVM RNA-class probability 0.979490
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19605173 113 + 20766785
AGAAUACAUUUCAGAAAUGUGAGCCUUUUCUUGCAGCUUCCUGUGGUUAUAUCUGCAACGUAGAAUUUGGUGCGUGAGUCACUAAAAGAUAUAACCACUUUUGAUGCUCGAAU-
....((((((.....))))))......(((..(((.......((((((((((((...........((((((((....).)))))))))))))))))))......)))..))).- ( -31.42)
>DroSec_CAF1 3800 113 + 1
AGAAUACAUUUCAGAAAUGUGAGCCUUUUCUUGCAGCUUCCUGUGGUUAUAUCUGCAACGUAGAAUUUGGUGCUUGAGUCACUAAAAGAUAUGACCACUUUUGAUGCUUGAAA-
....((((((.....)))))).....((((..(((.......((((((((((((...........((((((((....).)))))))))))))))))))......)))..))))- ( -29.22)
>DroSim_CAF1 3671 114 + 1
AGAAUACAUUUCAGAAAUGUGAGCCUUUUCUUGCAGCUUCCUGUGGUUAUAUCUGCAACGUAGAAUUUGGUGCUUGAGUCACUAAAAGAUAUGACCACUUUUGAUGCUUGAAAG
....((((((.....)))))).....((((..(((.......((((((((((((...........((((((((....).)))))))))))))))))))......)))..)))). ( -30.02)
>DroEre_CAF1 3846 114 + 1
AGAAUAUACUUCAGAAAUGUGAGCCUUUUCUUGCAGCUUCCUGUGGUUAUAUCUGUAAUGAAGAAUUUGGUGCUUGAGUCACUAAAAGAUAUGACCACUUUUUAUGAAUAUAAG
....((((.(((((((.((..((......))..))..)))..((((((((((((...........((((((((....).)))))))))))))))))))......)))))))).. ( -28.60)
>DroYak_CAF1 3812 113 + 1
AGAAUGUACUUUAGAAAUGUGAGUCUUUUCUUGCAGCUUCCUGUGGUUAUAUCUGCAAUGAAGAAUUUGUUGCUUGAGUCACUAA-AGAUAUGACCACUUUGAAUCCAUGAAAG
........((((.(((.((..((......))..))..)))..((((((((((((((((..(.....)..))))(((......)))-))))))))))))............)))) ( -26.20)
>consensus
AGAAUACAUUUCAGAAAUGUGAGCCUUUUCUUGCAGCUUCCUGUGGUUAUAUCUGCAACGUAGAAUUUGGUGCUUGAGUCACUAAAAGAUAUGACCACUUUUGAUGCUUGAAAG
.(((.....))).(((.((..((......))..))..)))..((((((((((((...........((((((((....).)))))))))))))))))))................ (-24.64 = -25.32 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:28 2006