Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,603,266 – 19,603,374 |
Length | 108 |
Max. P | 0.968652 |
Location | 19,603,266 – 19,603,374 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.10 |
Mean single sequence MFE | -42.15 |
Consensus MFE | -21.86 |
Energy contribution | -22.83 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.39 |
Mean z-score | -2.72 |
Structure conservation index | 0.52 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19603266 108 + 20766785 AGUGGCAUAGUUG------------UCUCCACACUCGAGGAGCCCUUCCGCAGCUCCAUCUGCAGCUGCCUGCAGCAGUCCUCCGCAUGCUCCCGCAGCUUCUUUUCUUUGGCAGCCUCG .((((((....))------------...))))...(((((.(((.....((((......))))((((((..(((((........)).)))....))))))..........)))..))))) ( -33.50) >DroPse_CAF1 1926 108 + 1 AUCGGUAGAGUCG------------UCUCCACACUGGAGUUGCACUUGCGCAGCUCCAGCUGCAGCUGUCUGCAGCACUCUUCGGCGUGCUCGCGCAGCUUUUUCUCCUUGGAGGCUUCU ........((..(------------((((((((((((((((((......)))))))))).)).((((((..(((((((.(....).))))).)))))))).........)))))))..)) ( -48.70) >DroEre_CAF1 1941 108 + 1 AGUGGCAUAGUUG------------UCUCCACACUCGAGGAGCCCUUCCGCAGCUCCAUCUGCAGCUGCCUGCAGCAAUCCUCUGCGUGCUCCCGCAGCUUCUUUUCUUUGGCGGCCUCG .((((((....))------------...))))...(((((.(((.....((((......))))((((((..((((((......))).)))....))))))..........)))..))))) ( -36.50) >DroWil_CAF1 1902 120 + 1 AGAGGCAUUGUUGUUGUCGUUACGGUCUCCAAAUUCGAUGACGAUUUGCGCAGCUCCAUUUGCAGUUGCCGGCAACAUUCUUCGGCACGUUCGCGUAGCUUUUUCUCCUUCGAUGCCUCA .(((((((((.((((((((((((((.........))).)))).....(.((((((.(....).))))))))))))))......((((((....))).)))..........))))))))). ( -39.50) >DroAna_CAF1 1903 108 + 1 AGCGGCAUGGUAG------------UCUCCAGACUGGAGGAGCCCUUCCGCAGCUCCUGCUGCAGUUGCCGGCAGCACUCUUCGGCGUGUUCCCGCAGCUUUUUCUCCUUGGAUGCCUCG .(.(((((..(((------------((....)))))((((((.......(((((....)))))((((((.((.(((((.(....).))))))).))))))....))))))..))))).). ( -47.90) >DroPer_CAF1 1931 108 + 1 AUCGGUAGAGUCG------------UCUCCACACUGGAGUUGCACUUGCGCAGCUCCAGCUGCAGCUGUCUGCAGCACUCUUCGGCGUGCUCCCGCAGCUUUUUCUCCUUGGAGGCUUCG .......(((..(------------((((((((((((((((((......)))))))))).)).((((((..(.(((((.(....).))))))..)))))).........)))))))))). ( -46.80) >consensus AGCGGCAUAGUUG____________UCUCCACACUCGAGGAGCACUUCCGCAGCUCCAGCUGCAGCUGCCUGCAGCACUCUUCGGCGUGCUCCCGCAGCUUUUUCUCCUUGGAGGCCUCG ...(((....................(((.......)))..........((((......))))((((((..(.(((((.(....).))))))..))))))..............)))... (-21.86 = -22.83 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:27 2006