| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,600,340 – 19,600,443 |
| Length | 103 |
| Max. P | 0.775079 |
| Location | 19,600,340 – 19,600,443 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.84 |
| Mean single sequence MFE | -21.42 |
| Consensus MFE | -13.35 |
| Energy contribution | -12.68 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19600340 103 - 20766785 CUUCCCUUAAACAAUUUGGGAAACGUGGUGCUGUCCUCAGUCAAUGACACUCCGCUGAUUGUUUACCUAUCCAAUAUUCACACAAGUAAGCUAA-AUCAUUC----AC .(((((...........)))))..((((.(.((((..........))))).))))(((((((((((...................))))))..)-))))...----.. ( -18.81) >DroPse_CAF1 136 108 - 1 CUGCCCCUAAAUAAUCAAGGAAAUGUGGUGUUGGCGUCAGUCAAUGACACUCCUUUGAUUGUUUACCUGUCCAAUAUUCACACAAGUAAGCGGUUAUUUCCCACAAAC ..(((.......((((((((....(((..((((((....))))))..)))..))))))))((((((.(((...........))).))))))))).............. ( -25.10) >DroSim_CAF1 152 100 - 1 CUUCCCCUAAACAAUCUGGGAAACGUGGUGCUGUCCUCGGUCAAUGACACUCCGCUGAUUGUUUACCUAUCCAAUAUUCACACAAGUAAGCUAA-AUCA-------AC .......(((((((((..(....)((((.(.((((..........))))).)))).))))))))).............................-....-------.. ( -18.40) >DroYak_CAF1 1 84 - 1 CUUCCCUUAAACAAUCUGGGAAACGUGGUGCUGUCCUCAGUCAAUGACACUCCCCUCAUUGUUUACCUAUCCAAUAUUCACACA------------------------ .......((((((((..(((....(((.(((((....))).))....)))..)))..))))))))...................------------------------ ( -16.30) >DroAna_CAF1 457 105 - 1 CUUCCAUUAAACAAUCUGGGCAAUGUGGUGUUGUCUUCCGUCAAUGACACCCCCUUGAUUGUUUACCUGUCCAAUAUUCACACAAGUACGUUGAGAUCUUUCU---AC .......(((((((((.(((......(((((..(.........)..))))))))..)))))))))...(((((((...(......)...)))).)))......---.. ( -20.70) >DroPer_CAF1 392 108 - 1 CUGCCCCUAAAUAAUCAAGGAAAUGUGGUGUUGGCGUCAGUCAAUGACACUCCUUUGAUUGUUUACCUGUCCAAUAUUCACACAAGUAAGCGGAUAUUUCCCACAGAC .......(((((((((((((....(((..((((((....))))))..)))..))))))))))))).((((..(((((((.(........).)))))))....)))).. ( -29.20) >consensus CUUCCCCUAAACAAUCUGGGAAACGUGGUGCUGUCCUCAGUCAAUGACACUCCCCUGAUUGUUUACCUAUCCAAUAUUCACACAAGUAAGCUGA_AUCU__C____AC .......(((((((((.((((...(((.(((((....))).))....)))))).).)))))))))........................................... (-13.35 = -12.68 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:26 2006