Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,594,120 – 19,594,216 |
Length | 96 |
Max. P | 0.724152 |
Location | 19,594,120 – 19,594,216 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 90.45 |
Mean single sequence MFE | -22.95 |
Consensus MFE | -19.46 |
Energy contribution | -18.52 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.26 |
Mean z-score | -1.60 |
Structure conservation index | 0.85 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19594120 96 - 20766785 AUGUGAAAUGCGAACGCACACGCGGGUAUCGAUAGAGACACAGAUAUCGAUAUCGAUGUUGGAGUGUAAUUUAUAUUACAAAGUGAAAGUAUUGAA ......(((((...(((....))).(((...(((((.((((.(((((((....)))))))...))))..)))))..))).........)))))... ( -21.50) >DroSec_CAF1 3057 96 - 1 AUGUGAAAUGCGGACACACACGCUGGUAUCGAUAGAGGCCAAGAUAUCGAUAUUGAUGUUGGAGUGUGAUUUAUAUUGCAAAGUGAAAGCCUUUAA ...((.((((..((..(((((.((..((((((((..((........))..))))))))..)).))))).))..)))).))..((....))...... ( -21.70) >DroSim_CAF1 3400 96 - 1 AUGUGAAAUGCGGACACACACGCUGGUAUCGAUAGAGGCCAAGAUAUCGAUAUUGAUGUUGGAGUGUGAUUUAUAUUGCAAAGUGAAAGUCUUUAA ...........((((.(((((.((..((((((((..((........))..))))))))..)).))))).(((((........))))).)))).... ( -23.40) >DroYak_CAF1 3077 96 - 1 AUGUGAAAUGCGGACGCACACGCGGGUAUCGAUAGAAGCCAAGCUAUCGAUAUCGAUGGUAGAGUGUGAUUUAUAUUGCAAAGUGAAAGUUUUAAA .((..(..(((....)))(((((.(((.((....)).)))..(((((((....)))))))...))))).......)..))................ ( -25.20) >consensus AUGUGAAAUGCGGACACACACGCGGGUAUCGAUAGAGGCCAAGAUAUCGAUAUCGAUGUUGGAGUGUGAUUUAUAUUGCAAAGUGAAAGUCUUUAA .(((..((((..(((((((....((((.((....)).)))).(((((((....)))))))...))))).))..)))))))................ (-19.46 = -18.52 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:25 2006