| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,591,089 – 19,591,197 |
| Length | 108 |
| Max. P | 0.732979 |
| Location | 19,591,089 – 19,591,197 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.38 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -16.12 |
| Energy contribution | -16.07 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19591089 108 + 20766785 GCUACUAACUCAAACUGUCUAUGGCUUCCUGGACUUCACAACCACGAUUGGGAAUACCGUCAUGGUGUUCUCACCCCAAAGUUCUCCAGCCUUUGGUGAGUGU--AUUAU---------- .......(((((....(((((.((...)))))))..............((((((((((.....))))))))))..((((((.........)))))))))))..--.....---------- ( -27.00) >DroPse_CAF1 29 111 + 1 GUUACUUACUCAAACUGUUUAUGGAUUUUUGGACUUUACGACUACCAUUGGGAAUACCGUAAUGGUAUUUUCUCCCCAAAGCUCCCCACAUUUUGGUGAGUUUUUAUUAUU--------- ...((((((.((((.(((....(((.((((((.......((.((((((((((....)).)))))))).)).....)))))).)))..))).))))))))))..........--------- ( -26.90) >DroEre_CAF1 22 111 + 1 GUUACUAACUCAGACUGUUUACGGCUUCCUGGACUUUACAACCACUAUUGGGAAUACCGUCAUGGUGUUCUCGCCCCAAAGCUCUCCAGCCUUCGGUAAGUGU--AUUACUAU------- ((.....(((...((((.....((((....(((................(((((((((.....)))))))))((......))..)))))))..)))).)))..--...))...------- ( -23.70) >DroWil_CAF1 7279 111 + 1 CCUAUUGACUCAAACCGUCUAUGGAUUCCUGGAUUUUACAACAACAAUCGGGAACACUGUAAUGGUGUUCUCACCUCAAAGUUCUCCACAACUUGGUAAGUGGCUAUUAAA--------- .((((.(((.......))).)))).....(((..(((((..........(((((((((.....)))))))))......(((((......))))).)))))...))).....--------- ( -22.70) >DroAna_CAF1 23 120 + 1 GUUACUAACUCAAACAGUUUAUGGAUUUUUGGACUUUACAACCACAAUUGGUAAUACUGUUAUGGUAUUCUCCCCCCAAAGCUCUCCAGCAUUCGGUGAGUUUUUAUUUCUAAAAGAGCA ........(((.((((((((((.((((..(((.........))).)))).)))).))))))................(((((((.((.......)).)))))))...........))).. ( -22.00) >DroPer_CAF1 29 111 + 1 GUUACUUACUCAAACUGUUUAUGGAUUUUUGGACUUCACGACCACCAUUGGGAAUACCGUAAUGGUAUUUUCUCCCCAAAGCUCCCCACAUUUUGGUGAGUUUUUAUUAUU--------- ...((((((.((((.(((....(((.((((((.........(((....)))(((((((.....))))))).....)))))).)))..))).))))))))))..........--------- ( -26.90) >consensus GUUACUAACUCAAACUGUUUAUGGAUUCCUGGACUUUACAACCACAAUUGGGAAUACCGUAAUGGUAUUCUCACCCCAAAGCUCUCCACAAUUUGGUGAGUGUUUAUUAUU_________ .......(((((....(((((........)))))...............(((((((((.....)))))))))...((((((.........)))))))))))................... (-16.12 = -16.07 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:23 2006