Locus 6236

Sequence ID 2R_DroMel_CAF1
Location 19,588,625 – 19,588,745
Length 120
Max. P 0.789931
window9990

overview

Window 0

Location 19,588,625 – 19,588,745
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -46.02
Consensus MFE -37.48
Energy contribution -38.36
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.81
SVM decision value 0.58
SVM RNA-class probability 0.789931
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19588625 120 - 20766785
CAGGCCACUUCCACCCUUCAAGCAAAAGUCCGCCAGGCACUUGUCCGUGGUUCUGGUCUCCUCGCUCACAACCGGAGGCUCCUUCACUGCUGACUUGGCGGGCUUCUGCGGUUCAUGGGA
..((......)).(((.....(((.((((((((((((((...((..((((....(((((((............)))))))...)))).)))).)))))))))))).))).......))). ( -43.10)
>DroSec_CAF1 2563 120 - 1
CAGGCCACUGCCACCCUUCAGGCAAAAGUCCGCCAGGCACUUGUCCUUGGUCCUGGUCUCCUCGCUCACAACCGGAGGCUCCUUCACUGCUGGCUUGGCGGGCUUCUGCGGUUCAUGGGA
..(((....))).(((.....(((.(((((((((((((....((...(((....(((((((............)))))))...)))..))..))))))))))))).))).......))). ( -46.80)
>DroSim_CAF1 3282 120 - 1
CAGGCCACUGCCACCCUUCAGGCAAAAGUCCGCCAGGCACUUGUCCUUGGUCCUGGUCUCCUCGCUCACAACCGGAGGCUCCUUCACUGCUGGCUUGGCGGGCUUCUGCGGUUCAUGGGA
..(((....))).(((.....(((.(((((((((((((....((...(((....(((((((............)))))))...)))..))..))))))))))))).))).......))). ( -46.80)
>DroEre_CAF1 2649 120 - 1
CAGGCCACUUCCGCCUUUCAUGCAAAAGUCCGCCAGGCACUUGUCCGUGGUUCUGGUCUCCACGCUCACUGCCGGAGGCUCCUUGGCUGCCGGCUUGGCGGGCUUUUGCGGUUCAUGGGU
..((......))((((....((((((((((((((((((....(.(((.((....(((((((..((.....)).))))))))).)))).....))))))))))))))))))......)))) ( -54.00)
>DroYak_CAF1 2652 120 - 1
CAGGCCACUUCCGCCCUUCAUGCAAAAGUCCGCCAGGCACUUGUCCGUGGUUCUCGUCUCCUCGCUCACAGCCGGAGUCUCCUUGACUGCCGGCUUGACGACCUUCUGCGGUUCAUGGGU
....(((...((((...(((((...((((((....)).))))...)))))...........(((.(((.((((((((((.....)))).))))))))))))......))))....))).. ( -39.40)
>consensus
CAGGCCACUUCCACCCUUCAGGCAAAAGUCCGCCAGGCACUUGUCCGUGGUUCUGGUCUCCUCGCUCACAACCGGAGGCUCCUUCACUGCUGGCUUGGCGGGCUUCUGCGGUUCAUGGGA
..((......)).(((.....(((.(((((((((((((....((....((....(((((((............)))))))))...)).....))))))))))))).))).......))). (-37.48 = -38.36 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:22 2006