Locus 6235

Sequence ID 2R_DroMel_CAF1
Location 19,585,982 – 19,586,099
Length 117
Max. P 0.598051
window9989

overview

Window 9

Location 19,585,982 – 19,586,099
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.13
Mean single sequence MFE -35.28
Consensus MFE -20.11
Energy contribution -21.70
Covariance contribution 1.59
Combinations/Pair 1.27
Mean z-score -2.01
Structure conservation index 0.57
SVM decision value 0.13
SVM RNA-class probability 0.598051
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19585982 117 - 20766785
CAACCUGCUGAACAACCAGCGGAUCAACUUCUGGAGAUCGCUGUACCCCAAGAUCCUUGUCUUCUCCGCCGACUGCUGCAACUCCACGUUCUCGGGCAGCGGCCUGGUGAUCGCCAC---
....((((((......)))))).........(((.(((((((.......(((((....)))))....((((.(((((..(((.....)))....)))))))))..))))))).))).--- ( -37.00)
>DroGri_CAF1 39 116 - 1
UUAUCUUUCCAACAAUCAAAAAGUGAAAUUUUGGAAAAACUUGUAUCCAAAAAUUCUACACUUUGCUACAGAAUGCUGCAAUUCUACGAAUUCA-GCAACAAAAUAUUUAAUGACAU---
...............(((.((((((((.(((((((..........))))))).)))...))))).........(((((.(((((...)))))))-))).............)))...--- ( -18.10)
>DroSec_CAF1 35 117 - 1
CAACCUGCUGAACAACCAGCGGAUCAACUUCUGGCGAUCGCUGUACCCCAAGAUCCUCGUCUUCUCCGCCGACUGCUGCAACUCCACGUUCUCCGGCAGCGGCCUGCUGAUCGCCAC---
....((((((......)))))).........((((((((((........(((((....)))))....((((.((((((.(((.....)))...))))))))))..)).)))))))).--- ( -42.00)
>DroSim_CAF1 50 117 - 1
CAACCUGCUGAACAACCAGCGGAUCAACUUCUGGCGAUCGCUGUACCCCAAGAUCCUCGUCUUCUCCGCCGACUGCUGCAACUCCACGUUCUCCGGCAGCGGCCUGCUGGUCGCCAC---
....((((((......)))))).........((((((((((........(((((....)))))....((((.((((((.(((.....)))...))))))))))..)).)))))))).--- ( -41.40)
>DroEre_CAF1 35 117 - 1
CAACCUGCUGAACAACCAGCGGAUCAACUUCUGGAGAUCGCUGUACCCCAAGAUCCUCGUCUUCUCCGCCGACUGCUGCAACUCCACGUUCUCGGGCAGCGGCCUGGUGAUCGCCAC---
....((((((......)))))).........(((.(((((((.......(((((....)))))....((((.(((((..(((.....)))....)))))))))..))))))).))).--- ( -37.10)
>DroYak_CAF1 65 120 - 1
CAACCUGCUGAACAACCAGCGUAUCAACUUUUGGCGAUCGCUGUACCCAAAGAUCCUCGUCUACUCCGCCGACUGCUGCAACUCCACGUUCUCGGGCGGCGGCCUGGUGAUGGCCACUUC
......((((......))))...........((((.((((((........((((....))))...((((((.(((..((........))...))).))))))...)))))).)))).... ( -36.10)
>consensus
CAACCUGCUGAACAACCAGCGGAUCAACUUCUGGAGAUCGCUGUACCCCAAGAUCCUCGUCUUCUCCGCCGACUGCUGCAACUCCACGUUCUCGGGCAGCGGCCUGGUGAUCGCCAC___
....((((((......)))))).........(((.((((..........(((((....)))))....((((.(((((..(((.....)))....))))))))).....)))).))).... (-20.11 = -21.70 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:21 2006