Locus 6234

Sequence ID 2R_DroMel_CAF1
Location 19,585,303 – 19,585,404
Length 101
Max. P 0.996867
window9988

overview

Window 8

Location 19,585,303 – 19,585,404
Length 101
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 69.79
Mean single sequence MFE -29.62
Consensus MFE -12.85
Energy contribution -12.46
Covariance contribution -0.38
Combinations/Pair 1.70
Mean z-score -2.73
Structure conservation index 0.43
SVM decision value 2.76
SVM RNA-class probability 0.996867
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19585303 101 + 20766785
CUUAACAA--------CUCGACCAAAAAAGCGCGUUC---AAGAACUAAUC-CCACCAGCAUGGAAUAAGCUCCAAGAUUCGUGCUGGGGAUU--UCAGUCCUUGAGCGCCCACA
........--------.............(.((((((---(((.(((((((-((..(((((((((.............)))))))))))))))--..))).))))))))).)... ( -34.22)
>DroSim_CAF1 520 101 + 1
CUUAACCA--------CUCGACCAAAAAAGCGCGCUC---AAGAACUAAUC-CCGCCAGUAUGCAAUGUGCUCCAAGAUUCGUGCUGGGGAUU--UCAGUCCUUGAGCGCCCACA
........--------.............(.((((((---(((.(((((((-((..(((((((.(((.(......).))))))))))))))))--..))).))))))))).)... ( -35.30)
>DroEre_CAF1 711 98 + 1
CUUAACAA--------UGCGACCAAAAAAGCGCGUUC---AAGAACUA----CCCCCCGUGUGCAAUAAGCUCCAAGAUUCGCAUUGGGGUUU--CUAGUCCUUGGGUGCCCACA
........--------.((..........))(((..(---(((.((((----.((((.(((((.(((..........)))))))).))))...--.)))).))))..)))..... ( -26.30)
>DroYak_CAF1 662 102 + 1
CUUAAGAA--------CUCGACCAAAAAAGCGCAUUC---AAGAACUAAUCCCCCCCAGUAUGCAAUAAGCUCCAAGAUUCGUAUUGGGGUUU--CUAGUCCUUGGGUGCCCACA
........--------.............(.((((((---(((.((((.....((((((((((.(((..........)))))))))))))...--.)))).))))))))).)... ( -29.10)
>DroAna_CAF1 696 98 + 1
CUUAAUUC--------UGCGACCAAAAAAGCGUGCUC---AAGGACUGAUC-C---CGGUUUCCAA-AAGCUCCAAGUUGUUAAUU-GGGUUUCGUCAGUCCUUAAGUGCCCACA
........--------.((..........))(..((.---(((((((((((-(---(((((..(((-..........)))..))))-)))....)))))))))).))..)..... ( -29.60)
>DroPer_CAF1 649 105 + 1
CCUAACGGGUACGGUGUGGAGCCAAAAAAGUGUACUUUUAUAAGACUGGAC-C---AGUAAUCCAACCAGCUCCAA-AUGGAUAUUGAAGUUU---CAGUCUUUAAAUGA--ACA
((....))(((((.(.((....))....).))))).((((.(((((((((.-(---((((.((((...........-.)))))))))....))---)))))))))))...--... ( -23.20)
>consensus
CUUAACAA________CGCGACCAAAAAAGCGCGCUC___AAGAACUAAUC_CC_CCAGUAUGCAAUAAGCUCCAAGAUUCGUAUUGGGGUUU__UCAGUCCUUGAGUGCCCACA
...............................((((((...(((.((((....((.((((((((.................))))))))))......)))).)))))))))..... (-12.85 = -12.46 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:20 2006