Locus 6230

Sequence ID 2R_DroMel_CAF1
Location 19,577,873 – 19,577,988
Length 115
Max. P 0.743420
window9981

overview

Window 1

Location 19,577,873 – 19,577,988
Length 115
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 89.43
Mean single sequence MFE -33.20
Consensus MFE -23.18
Energy contribution -23.18
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.37
Structure conservation index 0.70
SVM decision value 0.46
SVM RNA-class probability 0.743420
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19577873 115 + 20766785
CCACAACUACCCGAUCGUCCCGAUUCCCAUGCAUGCUACAAAU-UAUCCCAAAGGAUACGCUUAAGUAAUGUAUUCCGCUUUAGACUGGAGAACAGCAUCAUGCAUAGGGAUUGGG
..................(((((((((.(((((((........-(((((....)))))...........(((.(((((........))))).)))....))))))).))))))))) ( -32.50)
>DroSec_CAF1 1073 115 + 1
CCACAACUACCCGAUCGUCCCGAUUCCCAUGCAUGCGACAAAA-UACCCCAAAGGAUUCGCUUGAGUAAUGUCUUCCGCUUUAGACUCGAGACCAGCAUCAUGCAUGGGGAUUGGG
..................(((((((((((((((((........-..((.....)).....(((((((...((.....)).....)))))))........))))))))))))))))) ( -37.70)
>DroSim_CAF1 276 116 + 1
CCACAACUACCCGAUCGUCCCGAUUCCCAUGCAUGCGACAAAAUUACACCAAAGGAUUCGCUUGAGUAAUGUCUUCCGCUUUAGACUCGAGACCAACAUCAUGCAUGGGGAUUGGG
..................(((((((((((((((((.............((...)).....(((((((...((.....)).....)))))))........))))))))))))))))) ( -36.60)
>DroEre_CAF1 538 115 + 1
CCACAACUACCCGAUCGUCCCGAUUCCCAUGCAUGCGACAAAU-UGCCCCAAAGGAUGCGCUUCAAUAAUGUAUUCCUCUUUCGACGUUAAACUAGCAUCAUGCAUAGGGAUUGGG
..................(((((((((.((((((((((....)-))).......(((((.......((((((............)))))).....))))))))))).))))))))) ( -31.10)
>DroYak_CAF1 537 115 + 1
CCACAACUACCCGAUCGUCCCGAUUCCCAUGCAUGCGACAAAU-UACCCCAAAGGAUGCGCUUAAAUAAUGUAUUCCUCUUCAGACGUUCAACUAGCAACAUGCAUAGGGAUUGGG
..................(((((((((.(((((((........-..((.....))....(((.....(((((............))))).....)))..))))))).))))))))) ( -28.10)
>consensus
CCACAACUACCCGAUCGUCCCGAUUCCCAUGCAUGCGACAAAU_UACCCCAAAGGAUGCGCUUAAGUAAUGUAUUCCGCUUUAGACUCGAGACCAGCAUCAUGCAUAGGGAUUGGG
..................(((((((((.(((((((..................(((...((.........))..))).(....)...............))))))).))))))))) (-23.18 = -23.18 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:13 2006