Locus 6228

Sequence ID 2R_DroMel_CAF1
Location 19,574,268 – 19,574,361
Length 93
Max. P 0.569533
window9978

overview

Window 8

Location 19,574,268 – 19,574,361
Length 93
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 96.01
Mean single sequence MFE -15.73
Consensus MFE -14.04
Energy contribution -13.93
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -1.17
Structure conservation index 0.89
SVM decision value 0.07
SVM RNA-class probability 0.569533
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19574268 93 + 20766785
UGUUAGCAAUGGUCGAUGUGGUAGUUUGUUUUGUAGUUUGCAAAACAUCUAUCGAACAAAAACAAUGAAUUACAAACCAAAGUAAAU-AAAAAC
((((.((..((((...((((((((..((((((((.....)))))))).)))))...((.......))....))).))))..)).)))-)..... ( -16.60)
>DroPse_CAF1 626 94 + 1
UGUUAGCAAUAGUCGAUGUGGUAGUUUGUUUUGUAGUUUGCAAAACAUCUAUUAAACAAAAACAAUGUAUUACAAACCAAAAUAAAUUAAAAGC
.((..((....))..))((..((((((((((((..(((((.((.((((................)))).)).)))))))))))))))))...)) ( -13.99)
>DroSim_CAF1 589 93 + 1
UGUUAGCAAUGGUCGAUGUGGUAGUUUGUUUUGUAGUUUGCAAAACAUCUAUCGAACAAAAACAAUGAAUUACAAACCAAAGUAAAU-AAAAAC
((((.((..((((...((((((((..((((((((.....)))))))).)))))...((.......))....))).))))..)).)))-)..... ( -16.60)
>DroEre_CAF1 408 93 + 1
UGUUAGCAAUGGUCGAUGUGGUAGUUUGUUUUGUAGUUUGCAAAACAUCUAUCGAACAAAAACAAUGAAUUACAAACCAAAGUAAAU-AAAAAC
((((.((..((((...((((((((..((((((((.....)))))))).)))))...((.......))....))).))))..)).)))-)..... ( -16.60)
>DroYak_CAF1 415 93 + 1
UGUUAGCAAUGGUCGAUGUGGUAGUUUGUUUUGUAGUUUGCAAAACAUCUAUCGAACAAAAACAAUGAAUUACAAACCAAAGUAAAU-AAAAAC
((((.((..((((...((((((((..((((((((.....)))))))).)))))...((.......))....))).))))..)).)))-)..... ( -16.60)
>DroPer_CAF1 629 94 + 1
UGUUAGCAAUAGUCGAUGUGGUAGUUUGUUUUGUAGUUUGCAAAACAUCUAUUAAACAAAAACAAUGUAUUACAAACCAAAAUAAAUUAAAAGC
.((..((....))..))((..((((((((((((..(((((.((.((((................)))).)).)))))))))))))))))...)) ( -13.99)
>consensus
UGUUAGCAAUGGUCGAUGUGGUAGUUUGUUUUGUAGUUUGCAAAACAUCUAUCGAACAAAAACAAUGAAUUACAAACCAAAGUAAAU_AAAAAC
(((...((.((.......((((((..((((((((.....)))))))).))))))........)).))....))).................... (-14.04 = -13.93 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:10 2006