| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,569,959 – 19,570,069 |
| Length | 110 |
| Max. P | 0.629055 |
| Location | 19,569,959 – 19,570,069 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.70 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -12.98 |
| Energy contribution | -14.04 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19569959 110 + 20766785 AAAAACACAAAUAAGAAAAAUUUCCCACCAUUUC-GUCCAAUCUUUUCAACGAGCCACACCGGAAAGAAAGAACCAGACCGGAAAAGAAUACGCGCUGGUGGUGGGUUUAU .......................((((((.....-......(((((((.............)))))))....(((((.(((..........)).))))))))))))..... ( -24.02) >DroSec_CAF1 419 109 + 1 AAAAACACAAAUAA-AAUAAUUUCCCACCAUUUC-GUCCAAUCUUUUCAACGAGCCACACCGGAAAGAAAGAACCAGACCGGAAAAGAAUACGCGUUGGUGGUGGGUAAGU ..............-....(((((((((((((.(-((....(((((((...(.....)..(((...............))))))))))....)))..))))))))).)))) ( -24.36) >DroSim_CAF1 411 109 + 1 AAAAACACAAAUAA-AAUAAUUUCCCACCAUUUC-GUCCAAUCUUUUCAACGAGCCACACCGGAAAGAAAGAACCAGACCGGAAAAGAAUACGCGUUGGUGGUGGGUAAGU ..............-....(((((((((((((.(-((....(((((((...(.....)..(((...............))))))))))....)))..))))))))).)))) ( -24.36) >DroEre_CAF1 1039 109 + 1 AAAAACCAUAAUAA-AAUUAUUUCCCACCAUUUC-GUCCAAUCUUUUCAACGAGCCACACCGGAAAGAAAGAACCAAACCGGAAAAGAAUAAGCGUUGGUGGUGGGUAGGU ....((((((((..-.)))))..(((((((((.(-((....(((((((...(.....)..(((...............))))))))))....)))..)))))))))..))) ( -24.46) >DroWil_CAF1 503 86 + 1 -GAAAUACAGUUAG-----AUUACGUACCAUUUUAAUGCAAUCCAAUUGAAGCACCACACCGGAAAGAAAGAAG------U----------UUCAUUGGUG-UGGGUUA-- -......(((((.(-----(((.(((.........))).)))).))))).(((.(((((((((...((((....------)----------))).))))))-)))))).-- ( -21.30) >DroYak_CAF1 427 109 + 1 AAAAACCAAAAUAA-AAUUAUUUCCCACCAUUUC-GUCCAAUCUUUUCAACGAGCCACACCGGAAAGAAAGAACCAAACCGGAAAGGAAGAAGCAUUGGUGCUGGGUAAGU ..............-..((((((..(((((((((-.(((..(((((((.............))))))).....((.....))...))).))))...)))))..)))))).. ( -20.12) >consensus AAAAACACAAAUAA_AAUAAUUUCCCACCAUUUC_GUCCAAUCUUUUCAACGAGCCACACCGGAAAGAAAGAACCAGACCGGAAAAGAAUACGCGUUGGUGGUGGGUAAGU .......................(((((((((.........(((((((.............))))))).....((.....))...............)))))))))..... (-12.98 = -14.04 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:09 2006