Locus 6226

Sequence ID	2R_DroMel_CAF1
Location	19,569,112 – 19,569,223
Length	111
Max. P	0.940116

overview

Window 6

Location	19,569,112 – 19,569,223
Length	111
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	65.79
Mean single sequence MFE	-24.10
Consensus MFE	-13.35
Energy contribution	-14.35
Covariance contribution	1.00
Combinations/Pair	1.27
Mean z-score	-1.67
Structure conservation index	0.55
SVM decision value	1.31
SVM RNA-class probability	0.940116
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19569112 111 - 20766785
UCUGCACAU-U-GUUUUCUGCCUAAUAGGAAUUCAACUGUUAAACCGAACUAAG-AAAGAUUUUCCUAUUGCGUUGCUUAAUUGGCAAAUCUACUCUGCUGAAUUGAUGCAAUA
.........-.-.......((..(((((((((((....(((......)))...)-)).....))))))))))(((((((((((((((.........)))).)))))).))))). ( -19.10)
>DroSec_CAF1 796 87 - 1
UCUGCACUU-U-GUUUUGUGUCUAAUAGGAAUUCAAAAG-----------------------UUCCUAUUGCGUUGCUCAAU-GGCAAUGCUUCUCUGCGGAUUAGAUGCAGU-
.(((((.((-(-(.(((((....(((((((((......)-----------------------))))))))((((((((....-))))))))......))))).))))))))).- ( -29.70)
>DroSim_CAF1 1034 86 - 1
UCUGCACUU-U-GUUUUGUGACUAAUAGGAAUUCAACAG-----------------------CUCCUAUUGCGUUGCUCAAU-GGCAAUGCU-CUCUGCGGACUAGAUGCAGU-
.(((((.((-(-(.(((((....(((((((.........-----------------------.)))))))((((((((....-)))))))).-....))))).))))))))).- ( -26.20)
>DroYak_CAF1 1091 113 - 1
UUUGUGCUAUUGAGCUUAGGCCUAAAAAGAAUUCAACAGCUGAACCGAACUACUAAAAGAUUUUCCUGUUGCACUUCCAAAUUGGCAAUGCUCCUCCGUGGUUUCGAUGCAUC-
...((((.(((((((....(((......(((..((((((..(((.(............).)))..))))))...)))......)))...)).((.....))..))))))))).- ( -21.40)
>consensus
UCUGCACUU_U_GUUUUGUGCCUAAUAGGAAUUCAACAG_______________________UUCCUAUUGCGUUGCUCAAU_GGCAAUGCU_CUCUGCGGAUUAGAUGCAGU_
((((((.................((((((((...............................))))))))((((((((.....)))))))).....))))))............ (-13.35 = -14.35 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:08 2006