Locus 6224

Sequence ID 2R_DroMel_CAF1
Location 19,563,687 – 19,563,807
Length 120
Max. P 0.849765
window9972

overview

Window 2

Location 19,563,687 – 19,563,807
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.17
Mean single sequence MFE -51.78
Consensus MFE -43.36
Energy contribution -44.12
Covariance contribution 0.76
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.84
SVM decision value 0.78
SVM RNA-class probability 0.849765
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19563687 120 - 20766785
UUGGAGGCGUGGGUUUCGGAGUGGUUCCACAGACUCGGAGCGCCAAUGAGGCGUUCUGCGCUCGGAAGGGUUCCCGUCGUGAGGGGCACGAAGGCGUUGACUGGGGCUGAACUGAAACCA
...........((((((((..((((((((..(((.(((((((((.....))))))))).((((....))))..((.(((((.....))))).)).)))...))))))))..)))))))). ( -50.90)
>DroSec_CAF1 3098 120 - 1
UUGGACACGUGGGUUUCGGAGUGGUUCCACUGACUCGGAGCGCCAAUGAGGCGUUCUGCGCCCGGAAGGGUUCCCGUCGUGAGGGGCACAAAGGCGUUGACAGGGGCUGCACUGAAACCA
...........((((((((.(..(((((...(((.(((((((((.....))))))))).((((....))))....)))((.((.(.(.....).).)).)).)))))..).)))))))). ( -54.50)
>DroSim_CAF1 3066 120 - 1
UUGGACGCGUGGGUUUCGGAGUGGUUCCACUGACUCGGAGCGCCAAUGAGGCGUUCUGCGCCCGGAAGGGUUCCCGUCGUGAGGGGCACAAAGGCGUUGACAGGGGCUGCACUGAAACCA
...........((((((((.(..(((((...(((.(((((((((.....))))))))).((((....))))....)))((.((.(.(.....).).)).)).)))))..).)))))))). ( -54.50)
>DroEre_CAF1 3095 120 - 1
UUGGAGACGUGGGACUCGGAGUGGUUCCACUGACUCGGAGCGCCAAGUAGGCGUUCUGCGCUUGGAAGGGUUCCCGCCGUCAGGGGCACGAACGCGUUGACUGGGGCUACACUGAAGCCA
..(....)...((..((((.(((((((((..(((.(((((((((.....)))))))(((.(((((..((....))....))))).)))....)).)))...))))))))).))))..)). ( -50.40)
>DroYak_CAF1 3262 120 - 1
UUGAAGGAUUGGGAUUCGGAGUGGUUCCAGUGACUCGGAGGGCCAAGUAGGCGUUCUGCGCUUGGCAGCGUUCCCGCCGUCAAGGGCACGAACGCGUUGACAGGGGCUACACUGAAAGCA
..............(((((.((((((((....(((.((....)).)))..(((((((((.((((((.(((....))).)))))).))).)))))).......)))))))).))))).... ( -48.60)
>consensus
UUGGAGGCGUGGGUUUCGGAGUGGUUCCACUGACUCGGAGCGCCAAUGAGGCGUUCUGCGCUCGGAAGGGUUCCCGUCGUGAGGGGCACGAAGGCGUUGACAGGGGCUGCACUGAAACCA
...........((((((((.((((((((........((((((((.....))))))))((((((....))((.(((........))).))....)))).....)))))))).)))))))). (-43.36 = -44.12 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:04 2006