Locus 6221

Sequence ID 2R_DroMel_CAF1
Location 19,556,332 – 19,556,442
Length 110
Max. P 0.819254
window9968

overview

Window 8

Location 19,556,332 – 19,556,442
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 89.45
Mean single sequence MFE -28.58
Consensus MFE -20.56
Energy contribution -20.60
Covariance contribution 0.04
Combinations/Pair 1.19
Mean z-score -2.31
Structure conservation index 0.72
SVM decision value 0.67
SVM RNA-class probability 0.819254
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19556332 110 + 20766785
GAAACCCCUUUAUAAGGAUAUUUUUGUUGGGGAUACCUCUUCUCGGCCUGCUUCACCAGGUCCUCCGCUUCGGCAAUCUUUUUGGCAGCGAUUCCCGACAUUUUCAACCA
((((..(((.....))).......((((((((((..........((((((......))))))...((((..(.(((.....))).))))))))))))))).))))..... ( -31.30)
>DroSec_CAF1 3431 110 + 1
GAACCACUUUUAUAAGGAUAUUUCUGUUGGGGAUACCUCUUUUCGGCCUGUUUCACCAGGUCCUCCGCUUCGCCAAUCUUUUUAGCAGCGAUUCCCGACAUUUUCAACAA
(((...(((....)))........((((((((((..........((((((......))))))...((((..((.((.....)).))))))))))))))))..)))..... ( -27.20)
>DroSim_CAF1 3305 110 + 1
GAACCACUUUUAGAGGGAUAUUUCUGUUGGGGAUACCUCUUCUCGGCCUGUUUCACCAGGUCCUCCGCUUCGGCAAUCUUUUUAGCAGCGAUUCCCGACAUUUUCAACAA
(((((.(((...))))).......((((((((((..((((....((((((......))))))....((....)).........)).))..))))))))))..)))..... ( -28.90)
>DroEre_CAF1 3511 110 + 1
GGAAUCCCUUUAUAAGGAUGUUUUUGCUAAGGAAACCUUUUCUCGGCCUGCUUCACCAGGUCCUCCGCCUCGGCAAUCUUUUUAGCAGCAAUUCCCGACAUUUUCAACAA
(((((.(((.....))).(((...(((((((((...........((((((......))))))....((....))....)))))))))))))))))............... ( -24.90)
>DroYak_CAF1 3406 110 + 1
GGAACCUCUUUAUAAGGAUGCUUCUGUUGGGAAUACCUCUUCUCGGCCUGCUUCACCAGGUCCUCCGCUUCGGCAAUCUUUUUUGCAGCUAUUCCCGACAUUUUCAACAA
(((((((.......))).......(((((((((((.((......((((((......))))))....((....))............)).))))))))))).))))..... ( -30.60)
>consensus
GAAACCCCUUUAUAAGGAUAUUUCUGUUGGGGAUACCUCUUCUCGGCCUGCUUCACCAGGUCCUCCGCUUCGGCAAUCUUUUUAGCAGCGAUUCCCGACAUUUUCAACAA
(((...(((.....))).......((((((((((..........((((((......))))))....(((.(.............).))).))))))))))..)))..... (-20.56 = -20.60 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:00 2006