Locus 6220

Sequence ID 2R_DroMel_CAF1
Location 19,555,670 – 19,555,790
Length 120
Max. P 0.630199
window9967

overview

Window 7

Location 19,555,670 – 19,555,790
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.89
Mean single sequence MFE -41.52
Consensus MFE -31.68
Energy contribution -31.49
Covariance contribution -0.19
Combinations/Pair 1.33
Mean z-score -2.09
Structure conservation index 0.76
SVM decision value 0.20
SVM RNA-class probability 0.630199
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19555670 120 + 20766785
UGACUUCUAGAGCAUGCUGAUAGAAGCGCAAAGCCAUGUCAGGAUGCUUGGAUUCAGUUAACUUGGCGGCUUUAUCCAAGGCGGAUGCGGCUGCCUCUGGGGAACCGUGCUGUUGAUACA
(((..((((.(((((.((((((...((.....))..)))))).))))))))).)))((((((..(((((((.(((((.....))))).)))))))...((....)).....))))))... ( -47.50)
>DroAna_CAF1 2935 120 + 1
UAACUUCUAGAGCAUGUUGAUAGAAUCGCAGUGCCAUGUCAGGGUGCUUAUUUUCGGUUAGUUUGGCAGCUUUGUCCAGAGCAGUGGCUGCUGCCUCCGGAGAACCAUGCUGCUGAUAAA
(((((....((((((.((((((.....((...))..)))))).))))))......)))))..(..(((((.((.(((.(((((((....)))).))).))).))....)))))..).... ( -38.50)
>DroSim_CAF1 2662 120 + 1
UGACUUCUAGAGCAUGCUGAUAGAAGCGCAAAGCCAUGUCAGGAUGCUUGGAUUCAGUUAACUUGGCGGCUUUAUCCAAGGCGGAUGCUGCUGCCUCUGGGGAACCGUGCUGUUGAUACA
(((..((((.(((((.((((((...((.....))..)))))).))))))))).)))((((((..((((((..(((((.....)))))..))))))...((....)).....))))))... ( -46.20)
>DroEre_CAF1 2847 120 + 1
UAACUUCUAAAGCAUGCUGAUAAAACCGCAAAGCCAUGUCAGGAUGCUUGGAUUCAGUUAACUUUGCGGCUUUAUCCAAGGCGGAUGCGGCUGCCUCUGGGGAACCAUGCUGUUGAUACA
.....(((((.((((.((((((..............)))))).)))))))))....((((((...((((((.(((((.....))))).))))))...(((....)))....))))))... ( -38.04)
>DroWil_CAF1 2719 120 + 1
UCACUUCGCCAGCAUGUUGAUAGAAUCGAAGAGCCAUUUCUGGAUGCUUUUGCUCAGUUAGUUUUGCAGCUUUGUCCAAUGCGGAUGCUGCAGCUUCAGGAGAUCCAUGUUGCUGAUACA
.....(((.(((((((..(((.......((((((.(((....))))))))).(((....(((..((((((...((((.....)))))))))))))....))))))))))))).))).... ( -32.60)
>DroYak_CAF1 2749 120 + 1
UAACUUCUAGAGCAUGCUGAUAGAACCGCAAGGCCAUGUCAGGAUGCUUGGAUUCAGUUAACUUAGCGGCUUUAUCCAAGGCGGAUGCAGCUGCCUCGGGGGAACCAUGCUGUUGAUACA
(((((((((.(((((.((((((...((....))...)))))).)))))))))...)))))..((((((((......(.((((((......)))))).)((....))..)))))))).... ( -46.30)
>consensus
UAACUUCUAGAGCAUGCUGAUAGAACCGCAAAGCCAUGUCAGGAUGCUUGGAUUCAGUUAACUUGGCGGCUUUAUCCAAGGCGGAUGCUGCUGCCUCUGGGGAACCAUGCUGUUGAUACA
(((((....((((((.((((((..............)))))).))))))......)))))..((((((((........((((((......))))))..((....))..)))))))).... (-31.68 = -31.49 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:59 2006