Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,146,192 – 3,146,310 |
Length | 118 |
Max. P | 0.659043 |
Location | 3,146,192 – 3,146,310 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.13 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -14.32 |
Energy contribution | -18.08 |
Covariance contribution | 3.75 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.55 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3146192 118 - 20766785 CCAAUUCUUUUGCAAAUUAUACUUUGCAAAUGUGUUUGUUCGAAUUAUUUAUUAUAUGGCUAUCAAGAAGCCAGACUGUUGUUCAAACAAACGAAUAGAUUUCGGCAGAAAUGCUG--AU ...((((.((((((((......))))))))...(((((((.((((.....((....(((((.......)))))....)).)))).))))))))))).....((((((....)))))--). ( -32.90) >DroSec_CAF1 35963 115 - 1 CAAAUUCUUUUGCAAAUAAUACUUUGCAUAGGUGUUUGUUCGAAUUAUUUAUUAUAUGGCUUUCAAGCAGCA-GAUUGUUGUUCAAACAAACGAAUAGAUUUCGGCAGAAAUGCUG---- ......(((.((((((......)))))).))).(((((((((................(((....)))....-..(((((.....))))).)))))))))..(((((....)))))---- ( -25.40) >DroSim_CAF1 36843 120 - 1 CAAAUUCGGUUGCAAAUUAUACUUUGCAAAGGUGUUUGUUCGAAUUAUUUAUUAUAUGGCUUUCAAGCAGCAAGAUUGUUGUUCAAACAAACGAAUAGAUUUCGGCAGAAAUGCUGUGAU ...((((..(((((((......)))))))....(((((((.((((.....(((.....(((....))).....)))....)))).)))))))))))..(((.(((((....))))).))) ( -27.80) >DroYak_CAF1 36358 101 - 1 AAAAGUCCUUUCCAAAUAAUAUUUUGCAAAGGUGUAUGUUUCAUUAAUUUAUUAUAUUUCUAUGAAGAAGCAAGCUU-UU------------GAAUACAUUUCA----AAACGCUG--AU ......(((((.((((......)))).)))))(((...((((((.(((.......)))...))))))..)))(((((-((------------(((.....))))----))).))).--.. ( -18.10) >consensus CAAAUUCUUUUGCAAAUAAUACUUUGCAAAGGUGUUUGUUCGAAUUAUUUAUUAUAUGGCUAUCAAGAAGCAAGAUUGUUGUUCAAACAAACGAAUAGAUUUCGGCAGAAAUGCUG__AU ......((((((((((......)))))))))).(((((((((..............(((((.......)))))...((((.....))))..)))))))))..(((((....))))).... (-14.32 = -18.08 + 3.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:00 2006