Locus 6219

Sequence ID 2R_DroMel_CAF1
Location 19,555,311 – 19,555,431
Length 120
Max. P 0.556087
window9966

overview

Window 6

Location 19,555,311 – 19,555,431
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -30.42
Consensus MFE -21.86
Energy contribution -21.78
Covariance contribution -0.08
Combinations/Pair 1.45
Mean z-score -1.76
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.556087
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19555311 120 + 20766785
CCUGAAGGUCUUUUCGGCUUCCACGGAAUCCCCGCGAGCCAGUUGGACCAUCACCAAGGCCACAACUAGGCGUCCAAUUUGUCCGUAAGAUUCCGUUUGCUGAUUCAAGCUGAUCUCCUU
...(.(((((...(((((....((((((((...(((..(.(((((((((........)(((.......))))))))))).)..)))..))))))))..)))))........))))).).. ( -37.80)
>DroAna_CAF1 2599 120 + 1
UCUGAAAGUUUUUUCUGCCUCCACAGAGUCACCACGUGCCAGUUGGACCAUUACCAGAGCGACGACCAAACGACCAAUCUGCCCGUAGGAUUCGGUUUGUUGAUUUAACCCAAUCUCCUU
............(((((......)))))......(((((...((((.......)))).)).)))..(((..(((((((((.......))))).))))..))).................. ( -18.40)
>DroSim_CAF1 2305 120 + 1
CCUGAAGGUCUUUUCGGCUUCCACGGAAUCCCCGCGAGCCAGUUGGACCAUCACCAAGGCCACAACUAGACGUCCAAUUUGUCCGUAGGAUUCCGUUUGCUGAUUCAAACUGAUCUCCUU
...(.(((((...(((((....(((((((((..(((..(.((((((((..((....((.......)).)).)))))))).)..))).)))))))))..)))))........))))).).. ( -37.60)
>DroEre_CAF1 2488 120 + 1
CCUGAAGGUCUUUUCGGCUUCCACGGAAUCCCCGCGAGCCAAUUGGACCAUCACCAAGGCCACAACUAGGCGACCAAUUUGUCCGUAUGAUUCCGUUUGCUGAUUCAAGCUGAUCUCCUU
...(.(((((...(((((....((((((((...(((..(.((((((....((.((.((.......)).)).)))))))).)..)))..))))))))..)))))........))))).).. ( -34.70)
>DroWil_CAF1 2352 120 + 1
UUUAAAGGAUUUUUCAGCUUCCACUGAAUCACCAAUUCCCAAUUGUACCAACACCAAAGCUACAACCAAGCGACCAAUUUGGCCAUAAGAUUCAGUUUGCUGAUUUAAUCCAAUUUCCCU
......(((((..(((((....((((((((..((((.....))))..((((.......(((.......))).......))))......))))))))..)))))...)))))......... ( -29.34)
>DroYak_CAF1 2380 120 + 1
CCUAAAGGUCUUUUCUGCUUCCACGGAAUCCCCGCGAGCCAAUUGUACCAUCACCAAGGCCACAACUAGGCGUCCAAUUUGUCCGUAUGAUUCUGUUUGCUGAUUCAAACUGAUCUCUUU
.....(((((...((.((....((((((((...(((..(.(((((.(((........)(((.......))))).))))).)..)))..))))))))..)).))........))))).... ( -24.70)
>consensus
CCUGAAGGUCUUUUCGGCUUCCACGGAAUCCCCGCGAGCCAAUUGGACCAUCACCAAGGCCACAACUAGGCGACCAAUUUGUCCGUAAGAUUCCGUUUGCUGAUUCAAACUGAUCUCCUU
......(((....(((((....((((((((...(((.((.((((((.....(.....)(((.......)))..)))))).)).)))..))))))))..))))).....)))......... (-21.86 = -21.78 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:57 2006